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Conformers: ABBIImiBZICOPNSYNN
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Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructs

Results of the assignment of 29 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012uvw_P_DG1_DG2BBBBB00840.18 BB00
022uvw_P_DG2_DG3B12BB04760.26 BB04
032uvw_P_DG3_DG4BBBBB00650.36 BB00
042uvw_P_DG4_DG5BBwBB02470.43 BB02
052uvw_P_DG5_DA6BBBBB00680.29 BB00
062uvw_P_DA6_DA7BBBBB00810.22 BB00
072uvw_P_DA7_DG8BBBBB00800.25 BB00
082uvw_P_DG8_DG9BBBBB00710.27 BB00
092uvw_P_DG9_DA10BBBBB00750.25 BB00
102uvw_P_DA10_DT11BBBBB01710.22 BB01
112uvw_P_DT11_DT12BBBBB00410.27 BB00
122uvw_P_DT12_DC13BBBBB00640.21 BB00
132uvw_P_DC13_DA14BBBBB00670.22 BB00
142uvw_T_DC2_DA3NANNANT00.70 BB2S
152uvw_T_DA3_DC4NANNANT00.73 OP28
162uvw_T_DC4_8OG5NANNANT00.59 BB2S
172uvw_T_8OG5_DG6NANNANT00.42 BBS1
182uvw_T_DG6_DA7BBBBB00830.23 BB00
192uvw_T_DA7_DA8B12BB04670.28 BB04
202uvw_T_DA8_DT9BBBBB00940.15 BB00
212uvw_T_DT9_DC10BBBBB00720.18 BB00
222uvw_T_DC10_DC11BBBBB00850.24 BB00
232uvw_T_DC11_DT12BBBBB00870.19 BB00
242uvw_T_DT12_DT13BBBBB00840.16 BB00
252uvw_T_DT13_DC14BBBBB00790.19 BB00
262uvw_T_DC14_DC15BBwBB02670.20 BB02
272uvw_T_DC15_DC16BBBBB00850.24 BB00
282uvw_T_DC16_DC17BBBBB00780.25 BB00
292uvw_T_DC17_DC18B12BB04910.16 BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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