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Conformers: ABBIImiBZICOPNSYNN
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Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructs

Results of the assignment of 29 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012uvu_P_DG1_DG2BBBBB00800.27 BB00
022uvu_P_DG2_DG3B12BB04810.24 BB04
032uvu_P_DG3_DG4BBBBB00750.31 BB00
042uvu_P_DG4_DG5BBwBB02620.29 BB02
052uvu_P_DG5_DA6BBBBB00660.32 BB00
062uvu_P_DA6_DA7B12BB04710.30 BB04
072uvu_P_DA7_DG8BBBBB00610.32 BB00
082uvu_P_DG8_DG9BBBBB00810.23 BB00
092uvu_P_DG9_DA10B12BB04840.22 BB04
102uvu_P_DA10_DT11BBBBB00740.28 BB00
112uvu_P_DT11_DT12BBBBB00760.26 BB00
122uvu_P_DT12_DC13BBBBB00680.22 BB00
132uvu_P_DC13_DA14BBBBB00740.22 BB00
142uvu_T_DC2_DA3NANNANT01.12 BB1S
152uvu_T_DA3_DC4NANNANT01.02 OP22
162uvu_T_DC4_8OG5NANNANT00.45 BB2S
172uvu_T_8OG5_DG6SYNBBS1130.37 BBS1
182uvu_T_DG6_DA7B12BB04600.35 BB04
192uvu_T_DA7_DA8B12BB04730.22 BB04
202uvu_T_DA8_DT9BBBBB00850.15 BB00
212uvu_T_DT9_DC10BBBBB00820.17 BB00
222uvu_T_DC10_DC11BBBBB00890.20 BB00
232uvu_T_DC11_DT12B12BB04780.20 BB04
242uvu_T_DT12_DT13BBBBB00890.21 BB00
252uvu_T_DT13_DC14B12BB04710.22 BB04
262uvu_T_DC14_DC15BBwBB02630.21 BB02
272uvu_T_DC15_DC16BBBBB00820.24 BB00
282uvu_T_DC16_DC17BBBBB00770.30 BB00
292uvu_T_DC17_DC18B12BB04850.21 BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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