Conformers:
ABBIImiBZICOPNSYNN
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STEM LOOP IIA FROM U2 SNRNA OF SACCHAROMYCES CEREVISIAE, NMR, MINIMIZED AVERAGE STRUCTURE
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 19 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2u2a_A_G1_G2 | AAA | AA00 | 47 | 0.24 |
| 02 | 2u2a_A_G2_U3 | AAA | AA00 | 65 | 0.15 |
| 03 | 2u2a_A_U3_C4 | AAA | AA00 | 69 | 0.18 |
| 04 | 2u2a_A_C4_A5 | AAA | AA00 | 62 | 0.29 |
| 05 | 2u2a_A_A5_G6 | AAA | AA00 | 83 | 0.23 |
| 06 | 2u2a_A_G6_U7 | AAu | AA12 | 20 | 0.46 |
| 07 | 2u2a_A_U7_G8 | AAA | AA08 | 47 | 0.50 |
| 08 | 2u2a_A_G8_U9 | NAN | NANT | 0 | 0.77 |
| 09 | 2u2a_A_U9_A10 | OPN | OP04 | 10 | 0.44 |
| 10 | 2u2a_A_A10_A11 | NAN | NANT | 0 | 0.45 |
| 11 | 2u2a_A_A11_C12 | NAN | NANT | 0 | 0.54 |
| 12 | 2u2a_A_C12_A13 | NAN | NANT | 0 | 0.83 |
| 13 | 2u2a_A_A13_A14 | AAA | AA08 | 37 | 0.48 |
| 14 | 2u2a_A_A14_C15 | AAA | AA00 | 44 | 0.27 |
| 15 | 2u2a_A_C15_U16 | AAA | AA00 | 76 | 0.25 |
| 16 | 2u2a_A_U16_G17 | AAA | AA00 | 66 | 0.27 |
| 17 | 2u2a_A_G17_A18 | AAA | AA00 | 46 | 0.26 |
| 18 | 2u2a_A_A18_C19 | AAA | AA00 | 56 | 0.20 |
| 19 | 2u2a_A_C19_C20 | AAA | AA00 | 64 | 0.22 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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