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Conformers: ABBIImiBZICOPNSYNN
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RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALS

Results of the assignment of 70 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012tra_A_U1_C2AAAAA00130.26 AA00
022tra_A_C2_C3AAAAA04630.44 AA04
032tra_A_C3_G4AAAAA00380.18 AA00
042tra_A_G4_U5AAAAA00570.25 AA00
052tra_A_U5_G6AAAAA08620.33 AA08
062tra_A_G6_A7NANNANT00.34 AB05
072tra_A_A7_U8NANNANT00.29 OP11
082tra_A_U8_A9NANNANT00.96 IC03
092tra_A_A9_G10NANNANT01.59 OP26
102tra_A_G10_U11AAAAA04580.39 AA04
112tra_A_U11_U12AAAAA04660.31 AA04
122tra_A_A14_A15AAAAA08510.43 AA08
132tra_A_A15_H2U16NANNANT01.11 OP17
142tra_A_H2U16_G17NANNANT01.65 OP21
152tra_A_G17_G.A18NANNANT00.62 IC04
162tra_A_G17_G.B18NANNANT00.79 OP17
172tra_A_G.A18_H2U19NANNANT01.74 OP27
182tra_A_H2U19_C20NANNANT00.86 ZZ02
192tra_A_C20_A21NANNANT00.78 OP07
202tra_A_A21_G22AAuAA13580.28 AA13
212tra_A_G22_A23AAwAA10690.16 AA10
222tra_A_A23_A24AAAAA03790.20 AA03
232tra_A_A24_U25AAAAA00680.24 AA00
242tra_A_U25_G26AAAAA04880.24 AA04
252tra_A_G26_G27AAAAA00400.22 AA00
262tra_A_G27_G28AAAAA00360.27 AA00
272tra_A_G28_C29AAAAA00650.28 AA00
282tra_A_C29_G30AAwAA10430.32 AA10
292tra_A_G30_C31AAAAA08800.21 AA08
302tra_A_U33_G.A34OPNOP03440.29 OP03
312tra_A_G.A34_U.A35NANNANT00.56 AA12
322tra_A_G.B34_U.B35AAAAA03600.35 AA03
332tra_A_U.A35_C.A36AAAAA00140.32 AA00
342tra_A_U.B35_C.B36AAAAA04480.42 AA04
352tra_A_C.A36_1MG37AAAAA00690.30 AA00
362tra_A_1MG37_C38NANNANT00.50 AA04
372tra_A_C38_G39AAAAA04170.66 AA04
382tra_A_G39_U40AAAAA08740.27 AA08
392tra_A_U40_G41AAAAA04820.25 AA04
402tra_A_G41_C42AAAAA00580.30 AA00
412tra_A_C42_C43AAAAA00240.32 AA00
422tra_A_C43_A44AAAAA00530.22 AA00
432tra_A_A44_G45AAAAA04300.30 AA04
442tra_A_G45_A46NANNANT00.76 AA07
452tra_A_A46_U47NANNANT01.34 OP08
462tra_A_U47_5MC48NANNANT01.53 OP06
472tra_A_5MC48_G49AAAAA03760.23 AA03
482tra_A_G49_G50AAAAA04820.26 AA04
492tra_A_G50_G51AAAAA00720.17 AA00
502tra_A_G51_G52AAwAA10350.20 AA10
512tra_A_G52_5MU53AAAAA08290.41 AA08
522tra_A_C55_A56AAAAA03690.32 AA03
532tra_A_A56_A57NANNANT00.63 IC03
542tra_A_A57_U58NANNANT00.68 OP14
552tra_A_U58_U59A-BAB05380.67 AB05
562tra_A_U59_C60OPNOP12460.29 OP12
572tra_A_C60_C61AAwAA10490.20 AA10
582tra_A_C61_C62AAAAA08120.42 AA08
592tra_A_C62_C63AAAAA00700.22 AA00
602tra_A_C63_G64AAAAA00700.21 AA00
612tra_A_G64_U65AAAAA03730.22 AA03
622tra_A_U65_C66AAAAA00510.19 AA00
632tra_A_C66_G67AAAAA04450.39 AA04
642tra_A_G67_C68AAAAA04290.44 AA04
652tra_A_C68_G69AAAAA00390.22 AA00
662tra_A_G69_G70AAAAA00390.26 AA00
672tra_A_G70_A71AAAAA00140.24 AA00
682tra_A_A71_G.A72NANNANT00.82 AB05
692tra_A_A71_G.B72NANNANT00.75 AA01
702tra_A_G.A72_C73NANNANT00.68 BA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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