Conformers:
ABBIImiBZICOPNSYNN
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AN INVESTIGATION OF THE STRUCTURE OF THE PSEUDOKNOT WITHIN THE GENE 32 MESSENGER RNA OF BACTERIOPHAGE T2 USING HETERONUCLEAR NMR METHODS
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 35 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2tpk_A_G1_C2 | NAN | NANT | 0 | 0.81 |
| 02 | 2tpk_A_C2_U3 | NAN | NANT | 0 | 0.80 |
| 03 | 2tpk_A_U3_G4 | AAA | AA00 | 97 | 0.10 |
| 04 | 2tpk_A_G4_A5 | AAA | AA00 | 97 | 0.10 |
| 05 | 2tpk_A_A5_C6 | AAA | AA00 | 95 | 0.12 |
| 06 | 2tpk_A_C6_C7 | NAN | NANT | 0 | 0.53 |
| 07 | 2tpk_A_C7_A8 | NAN | NANT | 0 | 2.04 |
| 08 | 2tpk_A_A8_G9 | NAN | NANT | 0 | 1.67 |
| 09 | 2tpk_A_G9_C10 | AAA | AA00 | 33 | 0.35 |
| 10 | 2tpk_A_C10_U11 | AAA | AA00 | 97 | 0.11 |
| 11 | 2tpk_A_U11_A12 | AAA | AA00 | 97 | 0.10 |
| 12 | 2tpk_A_A12_U13 | AAA | AA00 | 97 | 0.11 |
| 13 | 2tpk_A_U13_G14 | AAA | AA00 | 95 | 0.13 |
| 14 | 2tpk_A_G14_A15 | AAw | AA01 | 48 | 0.30 |
| 15 | 2tpk_A_A15_G16 | AAw | AA11 | 73 | 0.51 |
| 16 | 2tpk_A_G16_G17 | AAA | AA00 | 37 | 0.33 |
| 17 | 2tpk_A_G17_U18 | AAA | AA00 | 98 | 0.10 |
| 18 | 2tpk_A_U18_C19 | AAA | AA00 | 97 | 0.12 |
| 19 | 2tpk_A_C19_A20 | AAA | AA00 | 95 | 0.12 |
| 20 | 2tpk_A_A20_U21 | NAN | NANT | 0 | 0.32 |
| 21 | 2tpk_A_U21_A22 | NAN | NANT | 0 | 0.87 |
| 22 | 2tpk_A_A22_C23 | NAN | NANT | 0 | 2.07 |
| 23 | 2tpk_A_C23_A24 | NAN | NANT | 0 | 0.91 |
| 24 | 2tpk_A_A24_U25 | AAw | AA01 | 13 | 0.39 |
| 25 | 2tpk_A_U25_C26 | NAN | NANT | 0 | 0.69 |
| 26 | 2tpk_A_C26_G27 | NAN | NANT | 0 | 1.00 |
| 27 | 2tpk_A_G27_U28 | NAN | NANT | 0 | 0.60 |
| 28 | 2tpk_A_U28_C29 | AAu | AA12 | 67 | 0.28 |
| 29 | 2tpk_A_C29_A30 | AAA | AA00 | 97 | 0.10 |
| 30 | 2tpk_A_A30_U31 | AAA | AA00 | 97 | 0.10 |
| 31 | 2tpk_A_U31_A32 | AAA | AA00 | 96 | 0.11 |
| 32 | 2tpk_A_A32_G33 | AAA | AA00 | 95 | 0.12 |
| 33 | 2tpk_A_G33_C34 | AAw | AA01 | 82 | 0.19 |
| 34 | 2tpk_A_C34_A35 | AAA | AA00 | 32 | 0.34 |
| 35 | 2tpk_A_A35_C36 | AAA | AA04 | 21 | 0.71 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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