DNATCO v4.1: results

SOLUTION STRUCTURE OF THE TOBRAMYCIN-RNA APTAMER COMPLEX, NMR, 13 STRUCTURES

Results of the assignment of 247 detected steps in 13 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	2tob-m10_A_A4_C5	AAw	AA01	49	0.31	AA01
002	2tob-m11_A_A4_C5	AAw	AA01	60	0.32	AA01
003	2tob-m12_A_A4_C5	AAw	AA01	61	0.29	AA01
004	2tob-m13_A_A4_C5	AAw	AA06	64	0.23	AA06
005	2tob-m1_A_A4_C5	AAw	AA01	36	0.39	AA01
006	2tob-m2_A_A4_C5	AAw	AA01	33	0.42	AA01
007	2tob-m3_A_A4_C5	AAw	AA01	36	0.38	AA01
008	2tob-m4_A_A4_C5	AAw	AA01	62	0.31	AA01
009	2tob-m5_A_A4_C5	AAw	AA01	30	0.41	AA01
010	2tob-m6_A_A4_C5	AAw	AA01	24	0.40	AA01
011	2tob-m7_A_A4_C5	AAw	AA01	63	0.32	AA01
012	2tob-m8_A_A4_C5	AAA	AA00	69	0.20	AA00
013	2tob-m9_A_A4_C5	AAA	AA00	82	0.18	AA00
014	2tob-m10_A_C5_U6	AAw	AA01	60	0.37	AA01
015	2tob-m11_A_C5_U6	AAA	AA00	48	0.29	AA00
016	2tob-m12_A_C5_U6	AAw	AA11	45	0.19	AA11
017	2tob-m13_A_C5_U6	AAu	AA12	19	0.50	AA12
018	2tob-m1_A_C5_U6	AAA	AA04	34	0.50	AA04
019	2tob-m2_A_C5_U6	NAN	NANT	0	0.83	AA04
020	2tob-m3_A_C5_U6	AAA	AA08	52	0.40	AA08
021	2tob-m4_A_C5_U6	AAA	AA00	57	0.25	AA00
022	2tob-m5_A_C5_U6	AAA	AA00	9	0.46	AA00
023	2tob-m6_A_C5_U6	AAA	AA08	52	0.36	AA08
024	2tob-m7_A_C5_U6	AAA	AA08	54	0.39	AA08
025	2tob-m8_A_C5_U6	AAA	AA00	77	0.20	AA00
026	2tob-m9_A_C5_U6	AAw	AA01	80	0.20	AA01
027	2tob-m10_A_U6_U7	AAA	AA00	22	0.33	AA00
028	2tob-m11_A_U6_U7	AAw	AA01	31	0.39	AA01
029	2tob-m12_A_U6_U7	AAw	AA11	13	0.48	AA11
030	2tob-m13_A_U6_U7	AAw	AA11	31	0.37	AA11
031	2tob-m1_A_U6_U7	NAN	NANT	0	0.61	AA10
032	2tob-m2_A_U6_U7	AAw	AA01	57	0.30	AA01
033	2tob-m3_A_U6_U7	AAA	AA00	25	0.34	AA00
034	2tob-m4_A_U6_U7	AAw	AA01	24	0.45	AA01
035	2tob-m5_A_U6_U7	AAw	AA11	19	0.55	AA11
036	2tob-m6_A_U6_U7	AAA	AA00	54	0.28	AA00
037	2tob-m7_A_U6_U7	AAA	AA00	35	0.34	AA00
038	2tob-m8_A_U6_U7	AAA	AA00	54	0.32	AA00
039	2tob-m9_A_U6_U7	AAw	AA01	17	0.47	AA01
040	2tob-m10_A_U7_G8	AAw	AA01	12	0.62	AA01
041	2tob-m11_A_U7_G8	NAN	NANT	0	0.51	AA11
042	2tob-m12_A_U7_G8	NAN	NANT	0	1.16	OP08
043	2tob-m13_A_U7_G8	NAN	NANT	0	0.60	AA11
044	2tob-m1_A_U7_G8	NAN	NANT	0	0.55	AA11
045	2tob-m2_A_U7_G8	NAN	NANT	0	0.52	AA11
046	2tob-m3_A_U7_G8	NAN	NANT	0	0.59	AA11
047	2tob-m4_A_U7_G8	NAN	NANT	0	0.53	AA11
048	2tob-m5_A_U7_G8	AAu	AA12	29	0.35	AA12
049	2tob-m6_A_U7_G8	NAN	NANT	0	0.51	AA11
050	2tob-m7_A_U7_G8	NAN	NANT	0	0.61	AA11
051	2tob-m8_A_U7_G8	NAN	NANT	0	0.55	AA11
052	2tob-m9_A_U7_G8	NAN	NANT	0	1.17	OP08
053	2tob-m10_A_G8_G9	AAw	AA06	10	0.47	AA06
054	2tob-m11_A_G8_G9	NAN	NANT	0	0.93	AA06
055	2tob-m12_A_G8_G9	NAN	NANT	0	1.11	AA05
056	2tob-m13_A_G8_G9	NAN	NANT	0	1.02	AA11
057	2tob-m1_A_G8_G9	NAN	NANT	0	0.98	AA06
058	2tob-m2_A_G8_G9	NAN	NANT	0	0.93	AA06
059	2tob-m3_A_G8_G9	NAN	NANT	0	1.01	AA06
060	2tob-m4_A_G8_G9	NAN	NANT	0	0.96	AA06
061	2tob-m5_A_G8_G9	NAN	NANT	0	0.65	AA06
062	2tob-m6_A_G8_G9	NAN	NANT	0	0.94	AA06
063	2tob-m7_A_G8_G9	NAN	NANT	0	1.05	AA05
064	2tob-m8_A_G8_G9	NAN	NANT	0	0.92	AA06
065	2tob-m9_A_G8_G9	NAN	NANT	0	1.09	AA05
066	2tob-m10_A_G9_U10	AAA	AA08	18	0.40	AA08
067	2tob-m11_A_G9_U10	AAA	AA08	38	0.30	AA08
068	2tob-m12_A_G9_U10	AAw	AA01	38	0.29	AA01
069	2tob-m13_A_G9_U10	AAA	AA00	51	0.29	AA00
070	2tob-m1_A_G9_U10	AAA	AA00	44	0.26	AA00
071	2tob-m2_A_G9_U10	AAA	AA00	39	0.33	AA00
072	2tob-m3_A_G9_U10	AAA	AA00	52	0.27	AA00
073	2tob-m4_A_G9_U10	AAA	AA08	52	0.27	AA08
074	2tob-m5_A_G9_U10	AAA	AA08	51	0.27	AA08
075	2tob-m6_A_G9_U10	AAA	AA00	37	0.31	AA00
076	2tob-m7_A_G9_U10	AAw	AA01	32	0.27	AA01
077	2tob-m8_A_G9_U10	AAA	AA08	30	0.31	AA08
078	2tob-m9_A_G9_U10	AAw	AA01	37	0.27	AA01
079	2tob-m10_A_U10_U11	NAN	NANT	0	0.45	AA01
080	2tob-m11_A_U10_U11	NAN	NANT	0	0.61	AA06
081	2tob-m12_A_U10_U11	A-B	AB04	35	0.54	AB04
082	2tob-m13_A_U10_U11	AAw	AA01	45	0.33	AA01
083	2tob-m1_A_U10_U11	NAN	NANT	0	0.63	AA06
084	2tob-m2_A_U10_U11	NAN	NANT	0	0.56	AA06
085	2tob-m3_A_U10_U11	NAN	NANT	0	0.58	AA06
086	2tob-m4_A_U10_U11	AAA	AA00	58	0.38	AA00
087	2tob-m5_A_U10_U11	AAA	AA08	57	0.27	AA08
088	2tob-m6_A_U10_U11	NAN	NANT	0	0.59	AA06
089	2tob-m7_A_U10_U11	AAA	AA08	11	0.48	AA08
090	2tob-m8_A_U10_U11	AAw	AA01	36	0.32	AA01
091	2tob-m9_A_U10_U11	AAA	AA08	24	0.42	AA08
092	2tob-m10_A_U11_U12	NAN	NANT	0	1.04	AA01
093	2tob-m11_A_U11_U12	NAN	NANT	0	0.90	AA01
094	2tob-m12_A_U11_U12	NAN	NANT	0	0.83	BA10
095	2tob-m13_A_U11_U12	AAA	AA08	53	0.32	AA08
096	2tob-m1_A_U11_U12	NAN	NANT	0	0.90	AA01
097	2tob-m2_A_U11_U12	NAN	NANT	0	0.84	AA01
098	2tob-m3_A_U11_U12	NAN	NANT	0	0.85	AA01
099	2tob-m4_A_U11_U12	AAw	AA01	31	0.56	AA01
100	2tob-m5_A_U11_U12	AAw	AA11	44	0.51	AA11
101	2tob-m6_A_U11_U12	NAN	NANT	0	0.89	AA01
102	2tob-m7_A_U11_U12	AAw	AA01	26	0.65	AA01
103	2tob-m8_A_U11_U12	NAN	NANT	0	0.59	AA11
104	2tob-m9_A_U11_U12	AAw	AA01	40	0.55	AA01
105	2tob-m10_A_U12_A13	OPN	OP04	22	0.30	OP04
106	2tob-m11_A_U12_A13	NAN	NANT	0	0.74	OP03
107	2tob-m12_A_U12_A13	NAN	NANT	0	0.55	OP04
108	2tob-m13_A_U12_A13	NAN	NANT	0	0.87	OP03
109	2tob-m1_A_U12_A13	NAN	NANT	0	0.73	OP03
110	2tob-m2_A_U12_A13	NAN	NANT	0	0.49	OP04
111	2tob-m3_A_U12_A13	NAN	NANT	0	0.45	OP04
112	2tob-m4_A_U12_A13	NAN	NANT	0	0.53	OP04
113	2tob-m5_A_U12_A13	NAN	NANT	0	0.66	OP04
114	2tob-m6_A_U12_A13	NAN	NANT	0	0.74	OP03
115	2tob-m7_A_U12_A13	NAN	NANT	0	0.47	OP04
116	2tob-m8_A_U12_A13	NAN	NANT	0	0.59	OP04
117	2tob-m9_A_U12_A13	NAN	NANT	0	0.52	OP04
118	2tob-m10_A_A13_G14	NAN	NANT	0	0.37	AA01
119	2tob-m11_A_A13_G14	AAw	AA01	44	0.32	AA01
120	2tob-m12_A_A13_G14	AAA	AA00	37	0.38	AA00
121	2tob-m13_A_A13_G14	AAw	AA01	62	0.26	AA01
122	2tob-m1_A_A13_G14	AAw	AA01	50	0.32	AA01
123	2tob-m2_A_A13_G14	AAA	AA00	30	0.38	AA00
124	2tob-m3_A_A13_G14	AAA	AA00	28	0.38	AA00
125	2tob-m4_A_A13_G14	AAA	AA00	25	0.39	AA00
126	2tob-m5_A_A13_G14	AAw	AA01	48	0.29	AA01
127	2tob-m6_A_A13_G14	AAw	AA01	45	0.32	AA01
128	2tob-m7_A_A13_G14	AAA	AA00	29	0.38	AA00
129	2tob-m8_A_A13_G14	AAw	AA01	33	0.34	AA01
130	2tob-m9_A_A13_G14	AAA	AA00	27	0.38	AA00
131	2tob-m10_A_G14_G15	NAN	NANT	0	1.02	OP17
132	2tob-m11_A_G14_G15	NAN	NANT	0	1.69	OP23
133	2tob-m12_A_G14_G15	NAN	NANT	0	2.02	BB2S
134	2tob-m13_A_G14_G15	NAN	NANT	0	1.17	OP17
135	2tob-m1_A_G14_G15	NAN	NANT	0	1.71	OP23
136	2tob-m2_A_G14_G15	NAN	NANT	0	2.03	BB2S
137	2tob-m3_A_G14_G15	NAN	NANT	0	2.05	BB2S
138	2tob-m4_A_G14_G15	NAN	NANT	0	2.04	BB2S
139	2tob-m5_A_G14_G15	NAN	NANT	0	1.67	OP23
140	2tob-m6_A_G14_G15	NAN	NANT	0	1.70	OP23
141	2tob-m7_A_G14_G15	NAN	NANT	0	2.05	BB2S
142	2tob-m8_A_G14_G15	NAN	NANT	0	2.10	BB2S
143	2tob-m9_A_G14_G15	NAN	NANT	0	2.12	BB2S
144	2tob-m10_A_G15_U16	NAN	NANT	0	0.79	OP27
145	2tob-m11_A_G15_U16	NAN	NANT	0	1.71	BA13
146	2tob-m12_A_G15_U16	NAN	NANT	0	1.61	BA16
147	2tob-m13_A_G15_U16	NAN	NANT	0	1.89	AA11
148	2tob-m1_A_G15_U16	NAN	NANT	0	1.60	BA16
149	2tob-m2_A_G15_U16	NAN	NANT	0	1.91	AA11
150	2tob-m3_A_G15_U16	NAN	NANT	0	1.67	BA16
151	2tob-m4_A_G15_U16	NAN	NANT	0	1.74	BA13
152	2tob-m5_A_G15_U16	NAN	NANT	0	1.76	AA11
153	2tob-m6_A_G15_U16	NAN	NANT	0	1.71	BA13
154	2tob-m7_A_G15_U16	NAN	NANT	0	1.66	BA16
155	2tob-m8_A_G15_U16	NAN	NANT	0	1.69	BA13
156	2tob-m9_A_G15_U16	NAN	NANT	0	1.73	BA16
157	2tob-m10_A_U16_A17	AAA	AA00	61	0.26	AA00
158	2tob-m11_A_U16_A17	AAA	AA08	79	0.29	AA08
159	2tob-m12_A_U16_A17	AAA	AA08	46	0.41	AA08
160	2tob-m13_A_U16_A17	AAA	AA08	72	0.32	AA08
161	2tob-m1_A_U16_A17	NAN	NANT	0	0.67	AA04
162	2tob-m2_A_U16_A17	AAA	AA08	71	0.32	AA08
163	2tob-m3_A_U16_A17	AAA	AA08	52	0.42	AA08
164	2tob-m4_A_U16_A17	AAA	AA08	63	0.39	AA08
165	2tob-m5_A_U16_A17	AAw	AA11	63	0.36	AA11
166	2tob-m6_A_U16_A17	AAA	AA08	76	0.34	AA08
167	2tob-m7_A_U16_A17	AAA	AA08	65	0.34	AA08
168	2tob-m8_A_U16_A17	AAw	AA11	37	0.38	AA11
169	2tob-m9_A_U16_A17	NAN	NANT	0	0.75	AA04
170	2tob-m10_A_A17_A18	AAw	AA11	56	0.31	AA11
171	2tob-m11_A_A17_A18	AAw	AA11	80	0.24	AA11
172	2tob-m12_A_A17_A18	NAN	NANT	0	0.71	BA09
173	2tob-m13_A_A17_A18	NAN	NANT	0	0.75	BA09
174	2tob-m1_A_A17_A18	NAN	NANT	0	0.68	AA10
175	2tob-m2_A_A17_A18	NAN	NANT	0	0.80	BA09
176	2tob-m3_A_A17_A18	NAN	NANT	0	0.72	BA09
177	2tob-m4_A_A17_A18	NAN	NANT	0	0.74	BA09
178	2tob-m5_A_A17_A18	AAw	AA11	72	0.21	AA11
179	2tob-m6_A_A17_A18	NAN	NANT	0	0.79	BA09
180	2tob-m7_A_A17_A18	AAw	AA11	80	0.13	AA11
181	2tob-m8_A_A17_A18	AAw	AA11	67	0.20	AA11
182	2tob-m9_A_A17_A18	NAN	NANT	0	0.65	AA10
183	2tob-m10_A_A18_U19	NAN	NANT	0	0.78	BA09
184	2tob-m11_A_A18_U19	AAw	AA06	61	0.38	AA06
185	2tob-m12_A_A18_U19	NAN	NANT	0	0.70	AA10
186	2tob-m13_A_A18_U19	NAN	NANT	0	0.72	AA10
187	2tob-m1_A_A18_U19	NAN	NANT	0	0.69	AA10
188	2tob-m2_A_A18_U19	AAA	AA08	68	0.36	AA08
189	2tob-m3_A_A18_U19	NAN	NANT	0	0.70	AA10
190	2tob-m4_A_A18_U19	NAN	NANT	0	0.70	AA10
191	2tob-m5_A_A18_U19	NAN	NANT	0	0.76	AA10
192	2tob-m6_A_A18_U19	AAw	AA06	62	0.42	AA06
193	2tob-m7_A_A18_U19	NAN	NANT	0	0.75	AA10
194	2tob-m8_A_A18_U19	NAN	NANT	0	0.76	AA10
195	2tob-m9_A_A18_U19	NAN	NANT	0	0.66	AA10
196	2tob-m10_A_U19_G20	NAN	NANT	0	0.70	AA01
197	2tob-m11_A_U19_G20	AAw	AA11	49	0.46	AA11
198	2tob-m12_A_U19_G20	AAA	AA08	45	0.32	AA08
199	2tob-m13_A_U19_G20	AAA	AA00	40	0.43	AA00
200	2tob-m1_A_U19_G20	AAw	AA01	15	0.50	AA01
201	2tob-m2_A_U19_G20	AAw	AA01	50	0.40	AA01
202	2tob-m3_A_U19_G20	AAw	AA06	26	0.56	AA06
203	2tob-m4_A_U19_G20	AAw	AA01	8	0.53	AA01
204	2tob-m5_A_U19_G20	AAw	AA11	20	0.52	AA11
205	2tob-m6_A_U19_G20	AAw	AA11	41	0.50	AA11
206	2tob-m7_A_U19_G20	AAw	AA06	28	0.54	AA06
207	2tob-m8_A_U19_G20	AAw	AA06	22	0.52	AA06
208	2tob-m9_A_U19_G20	AAw	AA01	16	0.49	AA01
209	2tob-m10_A_G20_A21	AAw	AA01	56	0.30	AA01
210	2tob-m11_A_G20_A21	NAN	NANT	0	0.74	AA04
211	2tob-m12_A_G20_A21	AAA	AA00	18	0.42	AA00
212	2tob-m13_A_G20_A21	AAw	AA06	28	0.33	AA06
213	2tob-m1_A_G20_A21	AAA	AA00	6	0.46	AA00
214	2tob-m2_A_G20_A21	NAN	NANT	0	0.64	AA06
215	2tob-m3_A_G20_A21	AAA	AA04	18	0.62	AA04
216	2tob-m4_A_G20_A21	AAA	AA04	20	0.64	AA04
217	2tob-m5_A_G20_A21	NAN	NANT	0	0.82	AA04
218	2tob-m6_A_G20_A21	AAA	AA00	5	0.51	AA00
219	2tob-m7_A_G20_A21	NAN	NANT	0	0.76	AA04
220	2tob-m8_A_G20_A21	NAN	NANT	0	0.63	AA04
221	2tob-m9_A_G20_A21	AAA	AA04	23	0.58	AA04
222	2tob-m10_A_A21_G22	AAA	AA00	32	0.32	AA00
223	2tob-m11_A_A21_G22	AAw	AA01	73	0.20	AA01
224	2tob-m12_A_A21_G22	AAw	AA01	77	0.23	AA01
225	2tob-m13_A_A21_G22	AAw	AA01	39	0.31	AA01
226	2tob-m1_A_A21_G22	AAw	AA01	65	0.18	AA01
227	2tob-m2_A_A21_G22	AAA	AA00	50	0.28	AA00
228	2tob-m3_A_A21_G22	NAN	NANT	0	0.65	AA06
229	2tob-m4_A_A21_G22	AAw	AA01	67	0.19	AA01
230	2tob-m5_A_A21_G22	AAw	AA01	74	0.19	AA01
231	2tob-m6_A_A21_G22	AAw	AA06	42	0.53	AA06
232	2tob-m7_A_A21_G22	AAw	AA01	76	0.20	AA01
233	2tob-m8_A_A21_G22	AAw	AA01	63	0.23	AA01
234	2tob-m9_A_A21_G22	AAw	AA01	70	0.19	AA01
235	2tob-m10_A_G22_U23	NAN	NANT	0	0.56	BB03
236	2tob-m11_A_G22_U23	NAN	NANT	0	0.62	BB03
237	2tob-m12_A_G22_U23	AAA	AA00	59	0.21	AA00
238	2tob-m13_A_G22_U23	AAA	AA08	53	0.23	AA08
239	2tob-m1_A_G22_U23	NAN	NANT	0	0.63	AA01
240	2tob-m2_A_G22_U23	NAN	NANT	0	0.56	AA01
241	2tob-m3_A_G22_U23	NAN	NANT	0	0.82	AA01
242	2tob-m4_A_G22_U23	NAN	NANT	0	0.62	AA01
243	2tob-m5_A_G22_U23	NAN	NANT	0	0.61	AA01
244	2tob-m6_A_G22_U23	AAw	AA06	30	0.61	AA06
245	2tob-m7_A_G22_U23	NAN	NANT	0	0.62	AA01
246	2tob-m8_A_G22_U23	AAA	AA08	68	0.20	AA08
247	2tob-m9_A_G22_U23	NAN	NANT	0	0.64	AA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 247 detected steps in 13 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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