DNATCO v4.1: results

Quadruplex structure of an RNA aptamer against bovine prion protein

Results of the assignment of 198 detected steps in 9 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	2rqj-m1_A_G1_G2	BBw	BB03	48	0.35	BB03
002	2rqj-m2_A_G1_G2	NAN	NANT	0	0.41	BB03
003	2rqj-m3_A_G1_G2	BBw	BB03	43	0.33	BB03
004	2rqj-m4_A_G1_G2	BBw	BB03	44	0.32	BB03
005	2rqj-m5_A_G1_G2	BBw	BB03	59	0.26	BB03
006	2rqj-m6_A_G1_G2	BBw	BB03	59	0.34	BB03
007	2rqj-m7_A_G1_G2	NAN	NANT	0	0.42	BB03
008	2rqj-m8_A_G1_G2	NAN	NANT	0	0.62	AB02
009	2rqj-m9_A_G1_G2	BBw	BB03	47	0.32	BB03
010	2rqj-m1_A_G2_A3	NAN	NANT	0	1.24	ZZ1S
011	2rqj-m2_A_G2_A3	NAN	NANT	0	1.23	ZZ1S
012	2rqj-m3_A_G2_A3	NAN	NANT	0	1.24	ZZ1S
013	2rqj-m4_A_G2_A3	NAN	NANT	0	1.23	ZZ1S
014	2rqj-m5_A_G2_A3	NAN	NANT	0	1.59	BB08
015	2rqj-m6_A_G2_A3	NAN	NANT	0	1.60	BB08
016	2rqj-m7_A_G2_A3	NAN	NANT	0	1.24	ZZ1S
017	2rqj-m8_A_G2_A3	NAN	NANT	0	1.20	ZZ1S
018	2rqj-m9_A_G2_A3	NAN	NANT	0	1.26	ZZ1S
019	2rqj-m1_A_A3_G4	NAN	NANT	0	1.03	BB1S
020	2rqj-m2_A_A3_G4	NAN	NANT	0	1.03	BB1S
021	2rqj-m3_A_A3_G4	NAN	NANT	0	1.03	BB1S
022	2rqj-m4_A_A3_G4	NAN	NANT	0	1.04	BB1S
023	2rqj-m5_A_A3_G4	NAN	NANT	0	1.04	BB1S
024	2rqj-m6_A_A3_G4	NAN	NANT	0	1.04	BB1S
025	2rqj-m7_A_A3_G4	NAN	NANT	0	1.02	BB1S
026	2rqj-m8_A_A3_G4	NAN	NANT	0	1.05	BB1S
027	2rqj-m9_A_A3_G4	NAN	NANT	0	1.02	BB1S
028	2rqj-m1_A_G4_G5	A-B	AB04	56	0.43	AB04
029	2rqj-m2_A_G4_G5	NAN	NANT	0	0.36	AB05
030	2rqj-m3_A_G4_G5	A-B	AB04	38	0.48	AB04
031	2rqj-m4_A_G4_G5	A-B	AB04	44	0.40	AB04
032	2rqj-m5_A_G4_G5	A-B	AB04	54	0.43	AB04
033	2rqj-m6_A_G4_G5	A-B	AB04	58	0.41	AB04
034	2rqj-m7_A_G4_G5	A-B	AB04	32	0.45	AB04
035	2rqj-m8_A_G4_G5	NAN	NANT	0	0.49	AB04
036	2rqj-m9_A_G4_G5	NAN	NANT	0	0.56	AA03
037	2rqj-m1_A_G5_A6	NAN	NANT	0	1.52	ZZ2S
038	2rqj-m2_A_G5_A6	NAN	NANT	0	1.52	ZZ2S
039	2rqj-m3_A_G5_A6	NAN	NANT	0	1.44	ZZ2S
040	2rqj-m4_A_G5_A6	NAN	NANT	0	1.50	ZZ2S
041	2rqj-m5_A_G5_A6	NAN	NANT	0	1.50	ZZ2S
042	2rqj-m6_A_G5_A6	NAN	NANT	0	1.49	ZZ2S
043	2rqj-m7_A_G5_A6	NAN	NANT	0	1.42	ZZ2S
044	2rqj-m8_A_G5_A6	NAN	NANT	0	1.48	ZZ2S
045	2rqj-m9_A_G5_A6	NAN	NANT	0	1.83	BB2S
046	2rqj-m1_A_A6_G7	NAN	NANT	0	0.59	OPS1
047	2rqj-m2_A_A6_G7	NAN	NANT	0	1.77	OP27
048	2rqj-m3_A_A6_G7	NAN	NANT	0	1.44	IC07
049	2rqj-m4_A_A6_G7	NAN	NANT	0	0.55	OPS1
050	2rqj-m5_A_A6_G7	NAN	NANT	0	0.56	OPS1
051	2rqj-m6_A_A6_G7	NAN	NANT	0	0.57	OPS1
052	2rqj-m7_A_A6_G7	NAN	NANT	0	1.47	IC07
053	2rqj-m8_A_A6_G7	NAN	NANT	0	1.47	IC07
054	2rqj-m9_A_A6_G7	NAN	NANT	0	0.46	OPS1
055	2rqj-m1_A_G7_G8	NAN	NANT	0	0.45	BB03
056	2rqj-m2_A_G7_G8	NAN	NANT	0	0.48	BB03
057	2rqj-m3_A_G7_G8	NAN	NANT	0	0.50	BB03
058	2rqj-m4_A_G7_G8	NAN	NANT	0	0.46	BB03
059	2rqj-m5_A_G7_G8	NAN	NANT	0	0.46	BB03
060	2rqj-m6_A_G7_G8	NAN	NANT	0	0.46	BB03
061	2rqj-m7_A_G7_G8	NAN	NANT	0	0.50	BB03
062	2rqj-m8_A_G7_G8	NAN	NANT	0	0.47	BB03
063	2rqj-m9_A_G7_G8	BBw	BB03	18	0.42	BB03
064	2rqj-m1_A_G8_A9	NAN	NANT	0	1.86	BB02
065	2rqj-m2_A_G8_A9	NAN	NANT	0	1.84	BB02
066	2rqj-m3_A_G8_A9	NAN	NANT	0	1.86	BB02
067	2rqj-m4_A_G8_A9	NAN	NANT	0	1.84	BB02
068	2rqj-m5_A_G8_A9	NAN	NANT	0	1.84	BB02
069	2rqj-m6_A_G8_A9	NAN	NANT	0	1.85	BB02
070	2rqj-m7_A_G8_A9	NAN	NANT	0	1.86	BB02
071	2rqj-m8_A_G8_A9	NAN	NANT	0	1.87	BB02
072	2rqj-m9_A_G8_A9	NAN	NANT	0	1.84	BB02
073	2rqj-m1_A_A9_G10	NAN	NANT	0	1.00	OP12
074	2rqj-m2_A_A9_G10	NAN	NANT	0	0.91	OP12
075	2rqj-m3_A_A9_G10	NAN	NANT	0	0.90	OP12
076	2rqj-m4_A_A9_G10	NAN	NANT	0	0.97	OP12
077	2rqj-m5_A_A9_G10	NAN	NANT	0	1.02	OP12
078	2rqj-m6_A_A9_G10	NAN	NANT	0	0.94	OP12
079	2rqj-m7_A_A9_G10	NAN	NANT	0	0.96	OP12
080	2rqj-m8_A_A9_G10	NAN	NANT	0	0.91	OP12
081	2rqj-m9_A_A9_G10	NAN	NANT	0	0.96	OP12
082	2rqj-m1_A_G10_G11	NAN	NANT	0	0.38	AA03
083	2rqj-m2_A_G10_G11	AAA	AA00	14	0.43	AA00
084	2rqj-m3_A_G10_G11	AAu	AA12	24	0.48	AA12
085	2rqj-m4_A_G10_G11	AAA	AA03	40	0.32	AA03
086	2rqj-m5_A_G10_G11	AAA	AA08	11	0.33	AA08
087	2rqj-m6_A_G10_G11	AAA	AA03	31	0.29	AA03
088	2rqj-m7_A_G10_G11	AAA	AA00	24	0.39	AA00
089	2rqj-m8_A_G10_G11	AAA	AA08	12	0.42	AA08
090	2rqj-m9_A_G10_G11	AAA	AA00	20	0.38	AA00
091	2rqj-m1_A_G11_A12	NAN	NANT	0	0.71	AA10
092	2rqj-m2_A_G11_A12	NAN	NANT	0	0.98	ZZ01
093	2rqj-m3_A_G11_A12	NAN	NANT	0	1.01	ZZ01
094	2rqj-m4_A_G11_A12	NAN	NANT	0	1.02	ZZ01
095	2rqj-m5_A_G11_A12	NAN	NANT	0	0.84	AA06
096	2rqj-m6_A_G11_A12	NAN	NANT	0	0.74	AA10
097	2rqj-m7_A_G11_A12	NAN	NANT	0	0.99	ZZ01
098	2rqj-m8_A_G11_A12	NAN	NANT	0	0.97	ZZ01
099	2rqj-m9_A_G11_A12	NAN	NANT	0	1.00	ZZ01
100	2rqj-m1_B_G13_G14	BBw	BB03	62	0.31	BB03
101	2rqj-m2_B_G13_G14	BBw	BB03	53	0.29	BB03
102	2rqj-m3_B_G13_G14	BBw	BB03	57	0.31	BB03
103	2rqj-m4_B_G13_G14	BBw	BB03	26	0.40	BB03
104	2rqj-m5_B_G13_G14	BBw	BB03	38	0.38	BB03
105	2rqj-m6_B_G13_G14	BBw	BB03	61	0.27	BB03
106	2rqj-m7_B_G13_G14	BBw	BB03	56	0.30	BB03
107	2rqj-m8_B_G13_G14	NAN	NANT	0	0.39	BB03
108	2rqj-m9_B_G13_G14	BBw	BB03	66	0.32	BB03
109	2rqj-m1_B_G14_A15	NAN	NANT	0	1.60	BB08
110	2rqj-m2_B_G14_A15	NAN	NANT	0	1.24	ZZ1S
111	2rqj-m3_B_G14_A15	NAN	NANT	0	1.22	ZZ1S
112	2rqj-m4_B_G14_A15	NAN	NANT	0	1.23	ZZ1S
113	2rqj-m5_B_G14_A15	NAN	NANT	0	1.25	ZZ1S
114	2rqj-m6_B_G14_A15	NAN	NANT	0	1.61	BB08
115	2rqj-m7_B_G14_A15	NAN	NANT	0	1.58	BB08
116	2rqj-m8_B_G14_A15	NAN	NANT	0	1.22	ZZ1S
117	2rqj-m9_B_G14_A15	NAN	NANT	0	1.60	BB08
118	2rqj-m1_B_A15_G16	NAN	NANT	0	1.04	BB1S
119	2rqj-m2_B_A15_G16	NAN	NANT	0	1.04	BB1S
120	2rqj-m3_B_A15_G16	NAN	NANT	0	1.04	BB1S
121	2rqj-m4_B_A15_G16	NAN	NANT	0	1.02	BB1S
122	2rqj-m5_B_A15_G16	NAN	NANT	0	1.03	BB1S
123	2rqj-m6_B_A15_G16	NAN	NANT	0	1.02	AAS1
124	2rqj-m7_B_A15_G16	NAN	NANT	0	1.05	BB1S
125	2rqj-m8_B_A15_G16	NAN	NANT	0	1.03	BB1S
126	2rqj-m9_B_A15_G16	NAN	NANT	0	1.04	BB1S
127	2rqj-m1_B_G16_G17	A-B	AB04	55	0.41	AB04
128	2rqj-m2_B_G16_G17	A-B	AB04	51	0.39	AB04
129	2rqj-m3_B_G16_G17	A-B	AB04	35	0.43	AB04
130	2rqj-m4_B_G16_G17	NAN	NANT	0	0.46	AB04
131	2rqj-m5_B_G16_G17	A-B	AB04	47	0.49	AB04
132	2rqj-m6_B_G16_G17	A-B	AB04	52	0.33	AB04
133	2rqj-m7_B_G16_G17	A-B	AB04	58	0.42	AB04
134	2rqj-m8_B_G16_G17	NAN	NANT	0	0.69	BB16
135	2rqj-m9_B_G16_G17	A-B	AB04	56	0.42	AB04
136	2rqj-m1_B_G17_A18	NAN	NANT	0	1.50	ZZ2S
137	2rqj-m2_B_G17_A18	NAN	NANT	0	1.51	ZZ2S
138	2rqj-m3_B_G17_A18	NAN	NANT	0	1.45	ZZ2S
139	2rqj-m4_B_G17_A18	NAN	NANT	0	1.37	ZZ2S
140	2rqj-m5_B_G17_A18	NAN	NANT	0	1.48	ZZ2S
141	2rqj-m6_B_G17_A18	NAN	NANT	0	1.42	ZZ2S
142	2rqj-m7_B_G17_A18	NAN	NANT	0	1.46	ZZ2S
143	2rqj-m8_B_G17_A18	NAN	NANT	0	1.48	ZZ2S
144	2rqj-m9_B_G17_A18	NAN	NANT	0	1.50	ZZ2S
145	2rqj-m1_B_A18_G19	NAN	NANT	0	0.62	OPS1
146	2rqj-m2_B_A18_G19	NAN	NANT	0	0.56	OPS1
147	2rqj-m3_B_A18_G19	NAN	NANT	0	0.62	OPS1
148	2rqj-m4_B_A18_G19	NAN	NANT	0	1.49	IC03
149	2rqj-m5_B_A18_G19	NAN	NANT	0	1.52	IC07
150	2rqj-m6_B_A18_G19	NAN	NANT	0	0.54	OPS1
151	2rqj-m7_B_A18_G19	NAN	NANT	0	0.58	OPS1
152	2rqj-m8_B_A18_G19	NAN	NANT	0	0.67	OPS1
153	2rqj-m9_B_A18_G19	NAN	NANT	0	0.63	OPS1
154	2rqj-m1_B_G19_G20	NAN	NANT	0	0.50	BB03
155	2rqj-m2_B_G19_G20	NAN	NANT	0	0.47	BB03
156	2rqj-m3_B_G19_G20	NAN	NANT	0	0.49	BB03
157	2rqj-m4_B_G19_G20	NAN	NANT	0	0.49	BB03
158	2rqj-m5_B_G19_G20	NAN	NANT	0	0.52	BB03
159	2rqj-m6_B_G19_G20	NAN	NANT	0	0.45	BB03
160	2rqj-m7_B_G19_G20	NAN	NANT	0	0.48	BB03
161	2rqj-m8_B_G19_G20	NAN	NANT	0	0.47	BB03
162	2rqj-m9_B_G19_G20	NAN	NANT	0	0.49	BB03
163	2rqj-m1_B_G20_A21	NAN	NANT	0	1.83	BB02
164	2rqj-m2_B_G20_A21	NAN	NANT	0	1.84	BB02
165	2rqj-m3_B_G20_A21	NAN	NANT	0	1.85	BB02
166	2rqj-m4_B_G20_A21	NAN	NANT	0	1.84	BB02
167	2rqj-m5_B_G20_A21	NAN	NANT	0	1.85	BB02
168	2rqj-m6_B_G20_A21	NAN	NANT	0	1.85	BB02
169	2rqj-m7_B_G20_A21	NAN	NANT	0	1.86	BB02
170	2rqj-m8_B_G20_A21	NAN	NANT	0	1.85	BB02
171	2rqj-m9_B_G20_A21	NAN	NANT	0	1.86	BB02
172	2rqj-m1_B_A21_G22	NAN	NANT	0	1.01	OP12
173	2rqj-m2_B_A21_G22	NAN	NANT	0	1.04	OP12
174	2rqj-m3_B_A21_G22	NAN	NANT	0	0.95	OP12
175	2rqj-m4_B_A21_G22	NAN	NANT	0	0.95	OP12
176	2rqj-m5_B_A21_G22	NAN	NANT	0	0.97	OP12
177	2rqj-m6_B_A21_G22	NAN	NANT	0	1.00	OP12
178	2rqj-m7_B_A21_G22	NAN	NANT	0	0.92	OP12
179	2rqj-m8_B_A21_G22	NAN	NANT	0	0.96	OP12
180	2rqj-m9_B_A21_G22	NAN	NANT	0	0.93	OP12
181	2rqj-m1_B_G22_G23	AAA	AA08	16	0.29	AA08
182	2rqj-m2_B_G22_G23	AAA	AA08	14	0.28	AA08
183	2rqj-m3_B_G22_G23	AAA	AA00	16	0.41	AA00
184	2rqj-m4_B_G22_G23	AAA	AA08	12	0.36	AA08
185	2rqj-m5_B_G22_G23	AAA	AA00	15	0.41	AA00
186	2rqj-m6_B_G22_G23	AAA	AA08	17	0.37	AA08
187	2rqj-m7_B_G22_G23	AAA	AA00	15	0.42	AA00
188	2rqj-m8_B_G22_G23	AAA	AA08	17	0.39	AA08
189	2rqj-m9_B_G22_G23	AAA	AA00	18	0.39	AA00
190	2rqj-m1_B_G23_A24	AAw	AA05	10	0.47	AA05
191	2rqj-m2_B_G23_A24	NAN	NANT	0	0.70	AA04
192	2rqj-m3_B_G23_A24	NAN	NANT	0	1.01	ZZ01
193	2rqj-m4_B_G23_A24	NAN	NANT	0	0.48	AA05
194	2rqj-m5_B_G23_A24	NAN	NANT	0	1.05	ZZ01
195	2rqj-m6_B_G23_A24	NAN	NANT	0	0.77	AA06
196	2rqj-m7_B_G23_A24	NAN	NANT	0	0.97	ZZ01
197	2rqj-m8_B_G23_A24	NAN	NANT	0	1.01	ZZ01
198	2rqj-m9_B_G23_A24	NAN	NANT	0	1.00	ZZ01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 198 detected steps in 9 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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