Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Solution structure of domain I of the negative polarity CChMVd hammerhead ribozyme
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2ro2_A_G1_G2 | AAA | AA00 | 81 | 0.17 |
| 02 | 2ro2_A_G2_G3 | AAA | AA00 | 83 | 0.17 |
| 03 | 2ro2_A_G3_A4 | AAA | AA00 | 82 | 0.11 |
| 04 | 2ro2_A_A4_G5 | AAA | AA00 | 80 | 0.23 |
| 05 | 2ro2_A_G5_A6 | AAA | AA00 | 84 | 0.20 |
| 06 | 2ro2_A_A6_C7 | AAA | AA00 | 90 | 0.13 |
| 07 | 2ro2_A_C7_C8 | AAA | AA00 | 84 | 0.18 |
| 08 | 2ro2_A_C8_U9 | AAA | AA00 | 67 | 0.36 |
| 09 | 2ro2_A_U9_G10 | A-B | AB05 | 45 | 0.35 |
| 10 | 2ro2_A_G10_A11 | BB2 | BB07 | 21 | 0.61 |
| 11 | 2ro2_A_A11_A12 | NAN | NANT | 0 | 0.67 |
| 12 | 2ro2_A_A12_G13 | BB2 | BB07 | 5 | 0.71 |
| 13 | 2ro2_A_G13_U14 | NAN | NANT | 0 | 0.83 |
| 14 | 2ro2_A_U14_G15 | NAN | NANT | 0 | 1.19 |
| 15 | 2ro2_A_G15_G16 | AAA | AA04 | 16 | 0.52 |
| 16 | 2ro2_A_G16_G17 | AAA | AA00 | 83 | 0.17 |
| 17 | 2ro2_A_G17_U18 | AAA | AA00 | 85 | 0.19 |
| 18 | 2ro2_A_U18_U19 | AAA | AA00 | 75 | 0.30 |
| 19 | 2ro2_A_U19_U20 | AAA | AA00 | 81 | 0.20 |
| 20 | 2ro2_A_U20_C21 | AAA | AA00 | 84 | 0.17 |
| 21 | 2ro2_A_C21_C22 | AAA | AA00 | 85 | 0.17 |
| 22 | 2ro2_A_C22_C23 | AAA | AA00 | 84 | 0.18 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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