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Conformers: ABBIImiBZICOPNSYNN
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Glutaminyl-tRNA synthetase mutant C229R with bound analog 5'-O-[N-(L-GLUTAMINYL)-SULFAMOYL]ADENOSINE

Results of the assignment of 73 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012rd2_B_G902_G903AAAAA00560.28 AA00
022rd2_B_G903_G904AAAAA00820.25 AA00
032rd2_B_G904_G905AAwAA01880.21 AA01
042rd2_B_G905_U906AAAAA08850.14 AA08
052rd2_B_U906_A907NANNANT00.50 AA06
062rd2_B_A907_U908NANNANT00.51 OP11
072rd2_B_U908_C909NANNANT00.82 AA07
082rd2_B_C909_G910NANNANT01.72 OP25
092rd2_B_G910_C911AAAAA00350.31 AA00
102rd2_B_C911_C912AAwAA01950.15 AA01
112rd2_B_C912_A913AAAAA08640.47 AA08
122rd2_B_A913_A914AAwAA01290.54 AA01
132rd2_B_A914_G915AAAAA08430.58 AA08
142rd2_B_G915_C916NANNANT02.12 ZZ02
152rd2_B_C916_G918NANNANT01.62 OP13
162rd2_B_G918_G919NANNANT00.97 AA07
172rd2_B_G919_U920NANNANT00.91 AA02
182rd2_B_U920_A921NANNANT01.98 OP21
192rd2_B_A921_A922NANNANT00.68 IC07
202rd2_B_A922_G923AAAAA08690.44 AA08
212rd2_B_G923_G924AAAAA00810.16 AA00
222rd2_B_G924_C925AAAAA00860.17 AA00
232rd2_B_C925_A926AAAAA00670.34 AA00
242rd2_B_A926_C927AAAAA00810.32 AA00
252rd2_B_C927_C928AAAAA00770.13 AA00
262rd2_B_C928_G929AAwAA01850.21 AA01
272rd2_B_G929_G930AAAAA08850.18 AA08
282rd2_B_G930_A931AAAAA00700.21 AA00
292rd2_B_A931_U932AAwAA01910.18 AA01
302rd2_B_U932_U933AAAAA08780.36 AA08
312rd2_B_U933_C934OPNOP29180.52 OP29
322rd2_B_C934_U935NANNANT00.71 OP16
332rd2_B_U935_G936NANNANT01.35 OP17
342rd2_B_G936_A937NANNANT00.94 OP01
352rd2_B_A937_U938AAAAA00220.48 AA00
362rd2_B_U938_U939AAAAA00340.40 AA00
372rd2_B_U939_C940AAAAA00650.32 AA00
382rd2_B_C940_C941AAwAA06620.34 AA06
392rd2_B_C941_G942AAAAA00420.36 AA00
402rd2_B_G942_G943AAAAA00810.20 AA00
412rd2_B_G943_C944AAAAA00720.22 AA00
422rd2_B_C944_A945NANNANT01.36 AA07
432rd2_B_A945_U946NANNANT01.49 OP31
442rd2_B_U946_U947NANNANT00.96 OP01
452rd2_B_U947_C948NANNANT00.68 AA03
462rd2_B_C948_C949NANNANT01.64 OP06
472rd2_B_C949_G950AAAAA00900.17 AA00
482rd2_B_G950_A951AAAAA00770.17 AA00
492rd2_B_A951_G952AAwAA01860.20 AA01
502rd2_B_G952_G953AAAAA00700.28 AA00
512rd2_B_G953_U954AAAAA00740.17 AA00
522rd2_B_U954_U955AAAAA08760.29 AA08
532rd2_B_U955_C956OPNOP03620.38 OP03
542rd2_B_C956_G957AAAAA08920.27 AA08
552rd2_B_G957_A958NANNANT00.79 AB04
562rd2_B_A958_A959NANNANT00.51 OP04
572rd2_B_A959_U960AAwAA05310.32 AA05
582rd2_B_U960_C961NANNANT00.49 OP12
592rd2_B_C961_C962AAAAA00810.15 AA00
602rd2_B_C962_U963AAAAA00180.33 AA00
612rd2_B_U963_C964AAAAA00700.23 AA00
622rd2_B_C964_G965AAwAA01760.19 AA01
632rd2_B_G965_U966AAAAA08800.15 AA08
642rd2_B_U966_A967AAAAA00750.18 AA00
652rd2_B_A967_C968AAAAA00700.21 AA00
662rd2_B_C968_C969AAAAA00850.17 AA00
672rd2_B_C969_C970AAAAA00880.18 AA00
682rd2_B_C970_C971AAAAA00660.21 AA00
692rd2_B_C971_A972AAuAA12210.70 AA12
702rd2_B_A972_G973NANNANT00.66 OP31
712rd2_B_G973_C974NANNANT01.09 OP25
722rd2_B_C974_C975NANNANT00.97 OP31
732rd2_B_C975_A976AAAAA00340.42 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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