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Conformers: ABBIImiBZICOPNSYNN
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Elongation complex of RNA polymerase II with a hepatitis delta virus-derived RNA stem loop

Results of the assignment of 12 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012r93_R_U1_G2AAAAA08630.43 AA08
022r93_R_G2_A3AAAAA00690.22 AA00
032r93_R_A3_U4AAAAA00760.19 AA00
042r93_R_U4_U5AAAAA08520.35 AA08
052r93_R_U5_C6AAwAA11260.47 AA11
062r93_R_C6_U7NANNANT00.63 AA03
072r93_R_C12_G13AAAAA04440.38 AA04
082r93_R_G13_G14AAAAA04860.22 AA04
092r93_R_G14_A15AAAAA00580.26 AA00
102r93_R_A15_A16AAAAA08730.28 AA08
112r93_R_A16_U17AAAAA03900.21 AA03
122r93_R_U17_C18AAAAA00470.35 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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