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Conformers: ABBIImiBZICOPNSYNN
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Elongation complex of RNA polymerase II with artificial RdRP scaffold

Results of the assignment of 17 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012r92_P_A8_G9NANNANT00.38 AA10
022r92_P_G9_A10AAAAA04610.48 AA04
032r92_P_A10_C11AAAAA00650.27 AA00
042r92_P_C11_C12AAAAA00540.19 AA00
052r92_P_C12_A13AAAAA00490.27 AA00
062r92_P_A13_G14AAAAA00680.25 AA00
072r92_P_G14_G15AAAAA08610.33 AA08
082r92_P_G15_C16AAuAA12350.57 AA12
092r92_T_C6_G7AAAAA08760.36 AA08
102r92_T_G7_C8AAAAA00840.15 AA00
112r92_T_C8_C9AAAAA00490.18 AA00
122r92_T_C9_U10AAAAA00440.23 AA00
132r92_T_U10_G11NANNANT00.45 AA06
142r92_T_G11_G12NANNANT00.62 AA03
152r92_T_G12_U13NANNANT00.78 AB02
162r92_T_U13_C14NANNANT00.64 AB02
172r92_T_C14_A15NANNANT00.36 AA09

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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