DNATCO v4.1: results

High resolution structure of a specific synthetic FAB bound to P4-P6 RNA ribozyme domain

Results of the assignment of 158 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	2r8s_R_G102_G103	NAN	NANT	0	0.54	AA04
002	2r8s_R_G103_A104	AAA	AA00	68	0.19	AA00
003	2r8s_R_A104_A105	AAA	AA08	85	0.26	AA08
004	2r8s_R_A105_U106	AAA	AA00	95	0.07	AA00
005	2r8s_R_U106_U107	OPN	OP01	81	0.67	OP01
006	2r8s_R_U107_G108	AAA	AA00	64	0.15	AA00
007	2r8s_R_G108_C109	AAw	AA01	95	0.16	AA01
008	2r8s_R_C109_G110	AAA	AA00	71	0.22	AA00
009	2r8s_R_G110_G111	AAA	AA00	93	0.13	AA00
010	2r8s_R_G111_G112	AAw	AA01	90	0.13	AA01
011	2r8s_R_G112_A113	AAA	AA00	37	0.47	AA00
012	2r8s_R_A113_A114	AAu	AA12	78	0.43	AA12
013	2r8s_R_A114_A115	AAA	AA00	78	0.25	AA00
014	2r8s_R_A115_G116	AAA	AA00	89	0.14	AA00
015	2r8s_R_G116_G117	AAA	AA00	82	0.18	AA00
016	2r8s_R_G117_G118	AAA	AA00	91	0.12	AA00
017	2r8s_R_G118_G119	AAA	AA00	72	0.22	AA00
018	2r8s_R_G119_U120	AAA	AA00	65	0.29	AA00
019	2r8s_R_U120_C121	AAA	AA00	61	0.21	AA00
020	2r8s_R_C121_A122	NAN	NANT	0	0.78	AA13
021	2r8s_R_A122_A123	NAN	NANT	0	1.70	BB14
022	2r8s_R_A123_C124	NAN	NANT	0	0.67	BA16
023	2r8s_R_C124_A125	NAN	NANT	0	0.89	OP14
024	2r8s_R_A125_G126	OPN	OP11	26	0.48	OP11
025	2r8s_R_G126_C127	AAA	AA00	81	0.28	AA00
026	2r8s_R_C127_C128	AAA	AA00	81	0.21	AA00
027	2r8s_R_C128_G129	AAA	AA00	78	0.20	AA00
028	2r8s_R_G129_U130	NAN	NANT	0	0.80	OP09
029	2r8s_R_U130_U131	OPN	OP11	37	0.77	OP11
030	2r8s_R_U131_C132	AAA	AA00	94	0.12	AA00
031	2r8s_R_C132_A133	AAA	AA08	83	0.20	AA08
032	2r8s_R_A133_G134	AAA	AA00	78	0.17	AA00
033	2r8s_R_G134_U135	AAA	AA00	70	0.25	AA00
034	2r8s_R_U135_A136	AAA	AA00	87	0.17	AA00
035	2r8s_R_A136_C137	AAA	AA00	61	0.27	AA00
036	2r8s_R_C137_C138	A-B	AB05	74	0.31	AB05
037	2r8s_R_C138_A139	NAN	NANT	0	1.33	OP16
038	2r8s_R_A139_A140	AAA	AA00	51	0.24	AA00
039	2r8s_R_A140_G141	AAA	AA00	28	0.42	AA00
040	2r8s_R_G141_U142	AAA	AA00	87	0.19	AA00
041	2r8s_R_U142_C143	AAA	AA00	95	0.10	AA00
042	2r8s_R_C143_U144	AAA	AA00	90	0.14	AA00
043	2r8s_R_U144_C145	AAA	AA00	83	0.14	AA00
044	2r8s_R_C145_A146	AAA	AA00	94	0.11	AA00
045	2r8s_R_A146_G147	AAA	AA00	76	0.21	AA00
046	2r8s_R_G147_G148	AAA	AA00	72	0.23	AA00
047	2r8s_R_G148_G149	AAA	AA04	81	0.34	AA04
048	2r8s_R_G149_G150	AAA	AA00	66	0.24	AA00
049	2r8s_R_G150_A151	OPN	OP03	88	0.13	OP03
050	2r8s_R_A151_A152	AAA	AA08	72	0.31	AA08
051	2r8s_R_A152_A153	AAA	AA00	47	0.33	AA00
052	2r8s_R_A153_C154	AAw	AA05	74	0.19	AA05
053	2r8s_R_C154_U155	AAA	AA00	84	0.20	AA00
054	2r8s_R_U155_U156	AAA	AA08	90	0.22	AA08
055	2r8s_R_U156_U157	AAA	AA08	86	0.19	AA08
056	2r8s_R_U157_G158	AAA	AA00	61	0.16	AA00
057	2r8s_R_G158_A159	AAA	AA00	93	0.11	AA00
058	2r8s_R_A159_G160	AAA	AA00	84	0.14	AA00
059	2r8s_R_G160_A161	AAA	AA00	91	0.13	AA00
060	2r8s_R_A161_U162	AAA	AA00	77	0.26	AA00
061	2r8s_R_U162_G163	AAA	AA00	51	0.43	AA00
062	2r8s_R_G163_G164	A-B	AB05	83	0.28	AB05
063	2r8s_R_G164_C165	OPN	OP12	61	0.35	OP12
064	2r8s_R_C165_C166	AAA	AA00	74	0.22	AA00
065	2r8s_R_C166_U167	ZZZ	ZZ01	89	0.15	ZZ01
066	2r8s_R_U167_U168	NAN	NANT	0	0.59	OP21
067	2r8s_R_U168_G169	NAN	NANT	0	0.59	OP21
068	2r8s_R_G169_C170	AAA	AA08	71	0.24	AA08
069	2r8s_R_C170_A171	A-B	AB05	66	0.32	AB05
070	2r8s_R_A171_A172	OPN	OP26	80	0.54	OP26
071	2r8s_R_A172_A173	AAA	AA00	58	0.40	AA00
072	2r8s_R_A173_G174	AAA	AA04	61	0.42	AA04
073	2r8s_R_G174_G175	AAA	AA08	88	0.16	AA08
074	2r8s_R_G175_G176	AAA	AA00	54	0.30	AA00
075	2r8s_R_G176_U177	AAA	AA00	76	0.33	AA00
076	2r8s_R_U177_A178	OPN	OP28	68	0.27	OP28
077	2r8s_R_A178_U179	NAN	NANT	0	0.53	OP21
078	2r8s_R_U179_G180	OPN	OP11	86	0.24	OP11
079	2r8s_R_G180_G181	AAA	AA00	80	0.19	AA00
080	2r8s_R_G181_U182	A-B	AB05	89	0.25	AB05
081	2r8s_R_U182_A183	NAN	NANT	0	0.95	OP11
082	2r8s_R_A183_A184	AAA	AA09	79	0.25	AA09
083	2r8s_R_A184_U185	NAN	NANT	0	1.53	OP21
084	2r8s_R_U185_A186	NAN	NANT	0	1.12	OP16
085	2r8s_R_A186_A187	NAN	NANT	0	1.03	IC07
086	2r8s_R_A187_G188	NAN	NANT	0	1.63	OPS1
087	2r8s_R_G188_C189	NAN	NANT	0	1.83	OPS1
088	2r8s_R_C189_U190	AAA	AA00	80	0.18	AA00
089	2r8s_R_U190_G191	AAA	AA00	94	0.11	AA00
090	2r8s_R_G191_A192	AAA	AA00	79	0.19	AA00
091	2r8s_R_A192_C193	AAA	AA00	84	0.19	AA00
092	2r8s_R_C193_G194	AAA	AA00	91	0.16	AA00
093	2r8s_R_G194_G195	AAA	AA00	88	0.26	AA00
094	2r8s_R_G195_A196	AAA	AA00	75	0.21	AA00
095	2r8s_R_A196_C197	AAA	AA00	78	0.18	AA00
096	2r8s_R_C197_A198	NAN	NANT	0	0.49	AA07
097	2r8s_R_A198_U199	NAN	NANT	0	1.75	OP18
098	2r8s_R_U199_G200	NAN	NANT	0	0.47	OP02
099	2r8s_R_G200_G201	AAA	AA00	63	0.22	AA00
100	2r8s_R_G201_U202	AAA	AA00	68	0.28	AA00
101	2r8s_R_U202_C203	AAA	AA08	82	0.21	AA08
102	2r8s_R_C203_C204	AAA	AA00	80	0.17	AA00
103	2r8s_R_C204_U205	AAA	AA00	61	0.26	AA00
104	2r8s_R_U205_A206	AAA	AA09	21	0.51	AA09
105	2r8s_R_A206_A207	AAu	AA12	65	0.43	AA12
106	2r8s_R_A207_C208	AAA	AA08	33	0.57	AA08
107	2r8s_R_C208_A210	AAA	AA08	74	0.36	AA08
108	2r8s_R_A210_C211	AAA	AA00	84	0.15	AA00
109	2r8s_R_C211_G212	AAA	AA00	87	0.16	AA00
110	2r8s_R_G212_C213	AAA	AA00	79	0.21	AA00
111	2r8s_R_C213_A214	AAw	AA01	82	0.24	AA01
112	2r8s_R_A214_G215	AAA	AA00	63	0.30	AA00
113	2r8s_R_G215_C216	AAA	AA00	86	0.24	AA00
114	2r8s_R_C216_C217	AAw	AA05	55	0.36	AA05
115	2r8s_R_C217_A218	AAu	AA13	65	0.31	AA13
116	2r8s_R_A218_A219	AAA	AA00	61	0.38	AA00
117	2r8s_R_A219_G220	AAA	AA00	17	0.42	AA00
118	2r8s_R_G220_U221	AAA	AA00	89	0.15	AA00
119	2r8s_R_U221_C222	AAA	AA08	74	0.21	AA08
120	2r8s_R_C222_C223	AAA	AA00	86	0.20	AA00
121	2r8s_R_C223_U224	AAA	AA00	83	0.21	AA00
122	2r8s_R_U224_A225	A-B	AB04	54	0.29	AB04
123	2r8s_R_A225_A226	OPN	OP26	66	0.51	OP26
124	2r8s_R_A226_G227	AAA	AA00	31	0.44	AA00
125	2r8s_R_G227_U228	AAA	AA00	82	0.27	AA00
126	2r8s_R_U228_C229	AAA	AA00	96	0.12	AA00
127	2r8s_R_C229_A230	AAA	AA00	95	0.13	AA00
128	2r8s_R_A230_A231	AAA	AA00	72	0.19	AA00
129	2r8s_R_A231_C232	AAA	AA00	77	0.14	AA00
130	2r8s_R_C232_A233	AAA	AA00	84	0.18	AA00
131	2r8s_R_A233_G234	AAA	AA00	83	0.15	AA00
132	2r8s_R_G234_A235	NAN	NANT	0	0.60	AA10
133	2r8s_R_A235_U236	NAN	NANT	0	0.71	OP04
134	2r8s_R_U236_C237	NAN	NANT	0	1.48	OP26
135	2r8s_R_C237_U238	NAN	NANT	0	1.80	OP27
136	2r8s_R_U238_U239	NAN	NANT	0	2.67	OP04
137	2r8s_R_U239_C240	NAN	NANT	0	0.70	AA05
138	2r8s_R_C240_U241	NAN	NANT	0	0.78	AA07
139	2r8s_R_U241_G242	AAA	AA00	76	0.14	AA00
140	2r8s_R_G242_U243	AAA	AA08	68	0.30	AA08
141	2r8s_R_U243_U244	AAA	AA00	81	0.21	AA00
142	2r8s_R_U244_G245	AAA	AA00	80	0.17	AA00
143	2r8s_R_G245_A246	AAA	AA00	80	0.18	AA00
144	2r8s_R_A246_U247	AAA	AA08	82	0.22	AA08
145	2r8s_R_U247_A248	ICL	IC01	79	0.24	IC01
146	2r8s_R_A248_U249	NAN	NANT	0	0.75	BB20
147	2r8s_R_U249_G250	OPN	OP12	59	0.62	OP12
148	2r8s_R_G250_G251	AAw	AA01	82	0.19	AA01
149	2r8s_R_G251_A252	AAA	AA08	91	0.26	AA08
150	2r8s_R_A252_U253	AAA	AA00	80	0.21	AA00
151	2r8s_R_U253_G254	AAA	AA00	37	0.41	AA00
152	2r8s_R_G254_C255	NAN	NANT	0	0.73	OP09
153	2r8s_R_C255_A256	OPN	OP11	50	0.64	OP11
154	2r8s_R_A256_G257	AAA	AA08	18	0.47	AA08
155	2r8s_R_G257_U258	AAA	AA00	61	0.25	AA00
156	2r8s_R_U258_U259	OPN	OP01	89	0.26	OP01
157	2r8s_R_U259_C260	AAA	AA00	86	0.20	AA00
158	2r8s_R_C260_A261	AAA	AA00	20	0.38	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 158 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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