Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of the Eukaryotic DNA Polymerase eta in complex with 1,2-d(GpG)-cisplatin containing DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 32 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2r8k_Q_DG5_DT6 | NAN | NANT | 0 | 0.32 |
| 02 | 2r8k_Q_DT6_DG7 | NAN | NANT | 0 | 0.64 |
| 03 | 2r8k_Q_DG7_DG8 | NAN | NANT | 0 | 0.65 |
| 04 | 2r8k_Q_DG8_DT9 | BBB | BB00 | 23 | 0.41 |
| 05 | 2r8k_Q_DT9_DG10 | BB2 | BB07 | 32 | 0.27 |
| 06 | 2r8k_Q_DG10_DA11 | BBB | BB00 | 52 | 0.27 |
| 07 | 2r8k_Q_DA11_DG12 | BBB | BB00 | 66 | 0.24 |
| 08 | 2r8k_U_DG4_DG5 | NAN | NANT | 0 | 1.07 |
| 09 | 2r8k_U_DG5_DC6 | NAN | NANT | 0 | 0.48 |
| 10 | 2r8k_U_DC6_DT7 | BBB | BB00 | 36 | 0.39 |
| 11 | 2r8k_U_DT7_DC8 | BBB | BB00 | 58 | 0.32 |
| 12 | 2r8k_U_DC8_DA9 | B12 | BB04 | 76 | 0.16 |
| 13 | 2r8k_U_DA9_DC10 | BBw | BB02 | 27 | 0.43 |
| 14 | 2r8k_U_DC10_DC11 | BBB | BB00 | 53 | 0.43 |
| 15 | 2r8k_U_DC11_DA12 | NAN | NANT | 0 | 0.54 |
| 16 | 2r8k_U_DA12_DC13 | BBB | BB00 | 46 | 0.47 |
| 17 | 2r8k_P_DG5_DT6 | miB | BB13 | 64 | 0.25 |
| 18 | 2r8k_P_DT6_DG7 | BBB | BB00 | 19 | 0.50 |
| 19 | 2r8k_P_DG7_DG8 | NAN | NANT | 0 | 0.63 |
| 20 | 2r8k_P_DG8_DT9 | BBB | BB00 | 81 | 0.24 |
| 21 | 2r8k_P_DT9_DG10 | BBB | BB00 | 56 | 0.20 |
| 22 | 2r8k_P_DG10_DA11 | B12 | BB04 | 61 | 0.24 |
| 23 | 2r8k_P_DA11_DG12 | BBB | BB00 | 82 | 0.20 |
| 24 | 2r8k_T_DG4_DG5 | NAN | NANT | 0 | 1.81 |
| 25 | 2r8k_T_DG5_DC6 | NAN | NANT | 0 | 0.45 |
| 26 | 2r8k_T_DC6_DT7 | BBB | BB00 | 44 | 0.34 |
| 27 | 2r8k_T_DT7_DC8 | NAN | NANT | 0 | 0.58 |
| 28 | 2r8k_T_DC8_DA9 | B12 | BB04 | 12 | 0.47 |
| 29 | 2r8k_T_DA9_DC10 | BBB | BB00 | 59 | 0.22 |
| 30 | 2r8k_T_DC10_DC11 | NAN | NANT | 0 | 0.36 |
| 31 | 2r8k_T_DC11_DA12 | NAN | NANT | 0 | 0.66 |
| 32 | 2r8k_T_DA12_DC13 | NAN | NANT | 0 | 0.86 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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