Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Cisplatin lesion containing RNA polymerase II elongation complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 31 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2r7z_T_DT11_DA12 | BBB | BB00 | 31 | 0.33 |
| 02 | 2r7z_T_DA12_DC13 | BBB | BB00 | 42 | 0.45 |
| 03 | 2r7z_T_DC13_DT14 | BBB | BB00 | 38 | 0.37 |
| 04 | 2r7z_T_DT14_DT15 | BBB | BB00 | 69 | 0.33 |
| 05 | 2r7z_T_DT15_DG16 | NAN | NANT | 0 | 0.32 |
| 06 | 2r7z_T_DG16_DG17 | A-B | AB04 | 28 | 0.30 |
| 07 | 2r7z_T_DG17_DC18 | NAN | NANT | 0 | 1.17 |
| 08 | 2r7z_T_DC18_DC19 | BBB | BB00 | 35 | 0.34 |
| 09 | 2r7z_T_DC19_DC20 | BBB | BB00 | 56 | 0.27 |
| 10 | 2r7z_T_DC20_DT21 | BBB | BB00 | 42 | 0.34 |
| 11 | 2r7z_T_DT21_DC22 | BBB | BB00 | 50 | 0.32 |
| 12 | 2r7z_T_DC22_DC23 | NAN | NANT | 0 | 0.40 |
| 13 | 2r7z_T_DC23_DT24 | NAN | NANT | 0 | 0.62 |
| 14 | 2r7z_T_DT24_DC25 | BBB | BB00 | 42 | 0.32 |
| 15 | 2r7z_T_DC25_DA26 | BBB | BB00 | 32 | 0.32 |
| 16 | 2r7z_T_DA26_DT27 | BBB | BB00 | 24 | 0.41 |
| 17 | 2r7z_N_DC1_DA2 | NAN | NANT | 0 | 0.63 |
| 18 | 2r7z_N_DA2_DA3 | NAN | NANT | 0 | 0.57 |
| 19 | 2r7z_N_DA3_DG4 | BBB | BB00 | 14 | 0.58 |
| 20 | 2r7z_N_DG4_DT5 | BBB | BB00 | 16 | 0.44 |
| 21 | 2r7z_N_DT5_DA6 | BBB | BB00 | 35 | 0.29 |
| 22 | 2r7z_N_DA6_DG7 | BBB | BB00 | 13 | 0.40 |
| 23 | 2r7z_P_U1_U2 | AAA | AA00 | 33 | 0.32 |
| 24 | 2r7z_P_U2_U3 | NAN | NANT | 0 | 0.55 |
| 25 | 2r7z_P_U3_G4 | AAA | AA00 | 38 | 0.24 |
| 26 | 2r7z_P_G4_A5 | AAA | AA00 | 76 | 0.22 |
| 27 | 2r7z_P_A5_G6 | AAA | AA00 | 85 | 0.14 |
| 28 | 2r7z_P_G6_G7 | AAA | AA00 | 67 | 0.19 |
| 29 | 2r7z_P_G7_A8 | AAA | AA00 | 66 | 0.25 |
| 30 | 2r7z_P_A8_G9 | AAA | AA00 | 53 | 0.31 |
| 31 | 2r7z_P_G9_G10 | AAu | AA12 | 19 | 0.52 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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