Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of Scr/Exd complex bound to a consensus Hox-Exd site
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2r5y_C_DA1_DC2 | BBB | BB00 | 80 | 0.22 |
| 02 | 2r5y_C_DC2_DT3 | B12 | BB04 | 29 | 0.26 |
| 03 | 2r5y_C_DT3_DC4 | BBw | BB11 | 80 | 0.30 |
| 04 | 2r5y_C_DC4_DT5 | B12 | BB04 | 52 | 0.30 |
| 05 | 2r5y_C_DT5_DA6 | B12 | BB04 | 48 | 0.36 |
| 06 | 2r5y_C_DA6_DT7 | BBB | BB00 | 88 | 0.19 |
| 07 | 2r5y_C_DT7_DG8 | B12 | BB04 | 83 | 0.20 |
| 08 | 2r5y_C_DG8_DA9 | BBB | BB00 | 86 | 0.19 |
| 09 | 2r5y_C_DA9_DT10 | BBB | BB00 | 90 | 0.18 |
| 10 | 2r5y_C_DT10_DT11 | BBB | BB00 | 84 | 0.20 |
| 11 | 2r5y_C_DT11_DT12 | NAN | NANT | 0 | 0.32 |
| 12 | 2r5y_C_DT12_DA13 | BBB | BB00 | 71 | 0.32 |
| 13 | 2r5y_C_DA13_DT14 | BBB | BB00 | 57 | 0.45 |
| 14 | 2r5y_C_DT14_DG15 | BBB | BB00 | 97 | 0.12 |
| 15 | 2r5y_C_DG15_DG16 | B12 | BB04 | 86 | 0.16 |
| 16 | 2r5y_C_DG16_DG17 | B12 | BB04 | 79 | 0.20 |
| 17 | 2r5y_C_DG17_DC18 | BBB | BB00 | 93 | 0.14 |
| 18 | 2r5y_C_DC18_DT19 | B12 | BB04 | 89 | 0.21 |
| 19 | 2r5y_C_DT19_DG20 | B12 | BB04 | 48 | 0.29 |
| 20 | 2r5y_D_DT21_DC22 | BBw | BB16 | 74 | 0.29 |
| 21 | 2r5y_D_DC22_DA23 | BB2 | BB07 | 72 | 0.41 |
| 22 | 2r5y_D_DA23_DG24 | BBB | BB00 | 74 | 0.18 |
| 23 | 2r5y_D_DG24_DC25 | BBB | BB00 | 75 | 0.39 |
| 24 | 2r5y_D_DC25_DC26 | BBB | BB00 | 86 | 0.20 |
| 25 | 2r5y_D_DC26_DC27 | BBB | BB00 | 55 | 0.18 |
| 26 | 2r5y_D_DC27_DA28 | BBB | BB00 | 89 | 0.20 |
| 27 | 2r5y_D_DA28_DT29 | BBB | BB00 | 59 | 0.21 |
| 28 | 2r5y_D_DT29_DA30 | BBB | BB00 | 65 | 0.30 |
| 29 | 2r5y_D_DA30_DA31 | BBB | BB00 | 79 | 0.30 |
| 30 | 2r5y_D_DA31_DA32 | B12 | BB04 | 62 | 0.20 |
| 31 | 2r5y_D_DA32_DT33 | BBB | BB00 | 95 | 0.17 |
| 32 | 2r5y_D_DT33_DC34 | B12 | BB04 | 87 | 0.17 |
| 33 | 2r5y_D_DC34_DA35 | BBw | BB02 | 47 | 0.38 |
| 34 | 2r5y_D_DA35_DT36 | BBB | BB00 | 67 | 0.26 |
| 35 | 2r5y_D_DT36_DA37 | BB2 | BB07 | 88 | 0.29 |
| 36 | 2r5y_D_DA37_DG38 | BBw | BB03 | 71 | 0.18 |
| 37 | 2r5y_D_DG38_DA39 | BB2 | BB07 | 63 | 0.26 |
| 38 | 2r5y_D_DA39_DG40 | BBw | BB02 | 55 | 0.27 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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