Conformers:
ABBIImiBZICOPNSYNN
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d(ATTTAGTTAACTAAAT) complexed with MMLV RT catalytic fragment
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 14 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2r2t_B_DA1_DT2 | BBw | BB02 | 82 | 0.19 |
| 02 | 2r2t_B_DT2_DT3 | BBw | BB02 | 83 | 0.19 |
| 03 | 2r2t_B_DT3_DT4 | BBw | BB02 | 64 | 0.31 |
| 04 | 2r2t_B_DT4_DA5 | BBB | BB00 | 56 | 0.38 |
| 05 | 2r2t_B_DA5_DG6 | BBw | BB02 | 76 | 0.23 |
| 06 | 2r2t_B_DG6_DT7 | BBw | BB02 | 82 | 0.21 |
| 07 | 2r2t_B_DT7_DT8 | BBB | BB00 | 77 | 0.22 |
| 08 | 2r2t_G_DA9_DA10 | B12 | BB04 | 79 | 0.23 |
| 09 | 2r2t_G_DA10_DC11 | BBw | BB02 | 83 | 0.17 |
| 10 | 2r2t_G_DC11_DT12 | BBw | BB02 | 81 | 0.19 |
| 11 | 2r2t_G_DT12_DA13 | BBw | BB02 | 27 | 0.42 |
| 12 | 2r2t_G_DA13_DA14 | BBw | BB02 | 59 | 0.34 |
| 13 | 2r2t_G_DA14_DA15 | BBw | BB02 | 49 | 0.39 |
| 14 | 2r2t_G_DA15_DT16 | BBB | BB00 | 81 | 0.29 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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