Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of a serine recombinase- DNA regulatory complex

Results of the assignment of 120 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0012r0q_A_DA1_DA2BBwBB03760.31 BB03
0022r0q_A_DA2_DC3BBBBB00600.25 BB00
0032r0q_A_DC3_DG4BBBBB00820.20 BB00
0042r0q_A_DG4_DT5BBBBB00810.26 BB00
0052r0q_A_DT5_DA6BBwBB02490.33 BB02
0062r0q_A_DA6_DT7BBBBB00520.39 BB00
0072r0q_A_DT7_DG8B12BB04830.20 BB04
0082r0q_A_DG8_DA9BBwBB02600.30 BB02
0092r0q_A_DA9_DT10BBBBB00620.26 BB00
0102r0q_A_DT10_DT11BBBBB00830.21 BB00
0112r0q_A_DT11_DA12B12BB04520.41 BB04
0122r0q_A_DA12_DG13B12BB04850.13 BB04
0132r0q_A_DG13_DG14BBwBB02790.16 BB02
0142r0q_A_DG14_DG15NANNANT00.32 BB02
0152r0q_A_DG15_DT16NANNANT00.87 BB16
0162r0q_A_DT16_DG17NANNANT00.42 BB02
0172r0q_A_DG17_DT18NANNANT00.71 BB16
0182r0q_A_DT18_DA19BBBBB00600.24 BB00
0192r0q_A_DA19_DT20BBBBB00740.28 BB00
0202r0q_A_DT20_DA21B12BB04900.25 BB04
0212r0q_A_DA21_DT22BBwBB02720.20 BB02
0222r0q_A_DT22_DT23BBBBB00450.23 BB00
0232r0q_A_DT23_DA24NANNANT00.36 BB13
0242r0q_A_DA24_DA25NANNANT00.51 BB03
0252r0q_A_DA25_DT26BBwBB02130.43 BB02
0262r0q_A_DT26_DT27BBBBB00760.25 BB00
0272r0q_A_DT27_DT28BBBBB00920.16 BB00
0282r0q_A_DT28_DA29B12BB05800.28 BB05
0292r0q_A_DA29_DT30NANNANT00.50 BB13
0302r0q_A_DT30_DA31BBBBB00380.48 BB00
0312r0q_B_DT32_DA33BBwBB16750.42 BB16
0322r0q_B_DA33_DA34miBBB13860.21 BB13
0332r0q_B_DA34_DA35BBBBB00250.48 BB00
0342r0q_B_DA35_DT36BBBBB00860.20 BB00
0352r0q_B_DT36_DT37BBBBB00670.31 BB00
0362r0q_B_DT37_DA38BBwBB02290.48 BB02
0372r0q_B_DA38_DA39BBwBB03580.36 BB03
0382r0q_B_DA39_DT40BBBBB01350.25 BB01
0392r0q_B_DT40_DA41BBBBB00690.17 BB00
0402r0q_B_DA41_DT42BBwBB02800.13 BB02
0412r0q_B_DT42_DA43BBwBB02900.22 BB02
0422r0q_B_DA43_DC44BBBBB00830.18 BB00
0432r0q_B_DC44_DA45BBwBB02420.33 BB02
0442r0q_B_DA45_DC46BBBBB00690.29 BB00
0452r0q_B_DC46_DC47B12BB04640.37 BB04
0462r0q_B_DC47_DC48BBwBB02140.43 BB02
0472r0q_B_DC48_DT49BBBBB00740.26 BB00
0482r0q_B_DT49_DA50BB2BB07390.35 BB07
0492r0q_B_DA50_DA51BBwBB02380.47 BB02
0502r0q_B_DA51_DT52BBwBB03360.35 BB03
0512r0q_B_DT52_DC53BBBBB01600.23 BB01
0522r0q_B_DC53_DA54BBwBB02730.33 BB02
0532r0q_B_DA54_DT55NANNANT00.38 BB02
0542r0q_B_DT55_DA56NANNANT00.19 BB00
0552r0q_B_DA56_DC57BBBBB00840.23 BB00
0562r0q_B_DC57_DG58BBwBB11710.33 BB11
0572r0q_B_DG58_DT59BBwBB16680.54 BB16
0582r0q_B_DT59_DT60B12BB04770.28 BB04
0592r0q_B_DT60_DT61B12BB04560.27 BB04
0602r0q_B_DT61_DA62BBwBB02200.44 BB02
0612r0q_G_DA1_DA2BBwBB03750.31 BB03
0622r0q_G_DA2_DC3BBBBB00590.25 BB00
0632r0q_G_DC3_DG4BBBBB00820.20 BB00
0642r0q_G_DG4_DT5BBBBB00810.26 BB00
0652r0q_G_DT5_DA6BBwBB02480.33 BB02
0662r0q_G_DA6_DT7BBBBB00520.39 BB00
0672r0q_G_DT7_DG8B12BB04820.20 BB04
0682r0q_G_DG8_DA9BBwBB02620.29 BB02
0692r0q_G_DA9_DT10BBBBB00650.26 BB00
0702r0q_G_DT10_DT11BBBBB00830.22 BB00
0712r0q_G_DT11_DA12B12BB04530.40 BB04
0722r0q_G_DA12_DG13B12BB04840.13 BB04
0732r0q_G_DG13_DG14BBwBB02810.16 BB02
0742r0q_G_DG14_DG15NANNANT00.32 BB02
0752r0q_G_DG15_DT16NANNANT00.87 BB16
0762r0q_G_DT16_DG17NANNANT00.42 BB02
0772r0q_G_DG17_DT18NANNANT00.71 BB16
0782r0q_G_DT18_DA19BBBBB00620.24 BB00
0792r0q_G_DA19_DT20BBBBB00720.28 BB00
0802r0q_G_DT20_DA21B12BB04900.25 BB04
0812r0q_G_DA21_DT22BBwBB02700.20 BB02
0822r0q_G_DT22_DT23BBBBB00440.23 BB00
0832r0q_G_DT23_DA24NANNANT00.36 BB13
0842r0q_G_DA24_DA25NANNANT00.51 BB03
0852r0q_G_DA25_DT26BBwBB02130.43 BB02
0862r0q_G_DT26_DT27BBBBB00750.26 BB00
0872r0q_G_DT27_DT28BBBBB00920.16 BB00
0882r0q_G_DT28_DA29B12BB05800.27 BB05
0892r0q_G_DA29_DT30NANNANT00.50 BB13
0902r0q_G_DT30_DA31BBBBB00380.48 BB00
0912r0q_H_DT32_DA33BBwBB16750.42 BB16
0922r0q_H_DA33_DA34miBBB13850.21 BB13
0932r0q_H_DA34_DA35BBBBB00230.48 BB00
0942r0q_H_DA35_DT36BBBBB00840.20 BB00
0952r0q_H_DT36_DT37B12BB04840.17 BB04
0962r0q_H_DT37_DA38BBwBB02290.48 BB02
0972r0q_H_DA38_DA39BBwBB03570.36 BB03
0982r0q_H_DA39_DT40BBBBB01350.24 BB01
0992r0q_H_DT40_DA41BBBBB00690.17 BB00
1002r0q_H_DA41_DT42BBwBB02800.13 BB02
1012r0q_H_DT42_DA43BBwBB02910.21 BB02
1022r0q_H_DA43_DC44BBBBB00840.18 BB00
1032r0q_H_DC44_DA45BBwBB02420.34 BB02
1042r0q_H_DA45_DC46BBBBB00680.28 BB00
1052r0q_H_DC46_DC47B12BB04640.36 BB04
1062r0q_H_DC47_DC48BBwBB02140.43 BB02
1072r0q_H_DC48_DT49BBBBB00720.26 BB00
1082r0q_H_DT49_DA50BB2BB07370.35 BB07
1092r0q_H_DA50_DA51BBwBB02380.47 BB02
1102r0q_H_DA51_DT52BBwBB03370.35 BB03
1112r0q_H_DT52_DC53BBBBB00640.20 BB00
1122r0q_H_DC53_DA54BBwBB02740.32 BB02
1132r0q_H_DA54_DT55NANNANT00.39 BB02
1142r0q_H_DT55_DA56NANNANT00.20 BB00
1152r0q_H_DA56_DC57BBBBB00830.23 BB00
1162r0q_H_DC57_DG58BBwBB11720.32 BB11
1172r0q_H_DG58_DT59BBwBB16670.55 BB16
1182r0q_H_DT59_DT60B12BB04750.28 BB04
1192r0q_H_DT60_DT61B12BB04560.26 BB04
1202r0q_H_DT61_DA62BBwBB02190.44 BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N