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Conformers: ABBIImiBZICOPNSYNN
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PP7 coat protein dimer in complex with RNA hairpin

Results of the assignment of 144 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0012qux_C_G1_G2AAAAA00670.26 AA00
0022qux_C_G2_C3AAAAA00830.18 AA00
0032qux_C_C3_A4AAAAA00780.23 AA00
0042qux_C_A4_C5AAAAA00850.21 AA00
0052qux_C_C5_A6NANNANT00.75 OP30
0062qux_C_A6_G7NANNANT01.30 OP31
0072qux_C_G7_A8AAAAA04680.34 AA04
0082qux_C_A8_A9AAAAA00930.08 AA00
0092qux_C_A9_G10AAAAA00560.19 AA00
0102qux_C_G10_A11AAAAA00800.21 AA00
0112qux_C_A11_U12OPNOP29900.00 OP29
0122qux_C_U12_A13NANNANT02.06 OP29
0132qux_C_A13_U14NANNANT01.48 OP17
0142qux_C_U14_G15NANNANT02.84 BB2S
0152qux_C_G15_G16NANNANT00.58 OP21
0162qux_C_G16_C17NANNANT00.29 OP11
0172qux_C_C17_U18AAAAA00820.16 AA00
0182qux_C_U18_U19AAAAA00850.14 AA00
0192qux_C_U19_C20AAAAA00820.15 AA00
0202qux_C_C20_G21AAAAA04890.17 AA04
0212qux_C_G21_U22AAAAA08860.19 AA08
0222qux_C_U22_G23AAAAA00790.11 AA00
0232qux_C_G23_C24AAAAA00300.31 AA00
0242qux_C_C24_C25AAwAA01250.30 AA01
0252qux_F_G1_G2AAAAA00780.11 AA00
0262qux_F_G2_C3AAAAA00900.18 AA00
0272qux_F_C3_A4AAAAA00890.15 AA00
0282qux_F_A4_C5AAAAA08700.18 AA08
0292qux_F_C5_A6NANNANT00.76 OP30
0302qux_F_A6_G7NANNANT01.35 OP31
0312qux_F_G7_A8AAAAA00580.25 AA00
0322qux_F_A8_A9AAAAA00950.09 AA00
0332qux_F_A9_G10AAAAA00660.26 AA00
0342qux_F_G10_A11AAAAA00640.28 AA00
0352qux_F_A11_U12OPNOP29910.10 OP29
0362qux_F_U12_A13NANNANT02.12 OP29
0372qux_F_A13_U14NANNANT01.38 OP13
0382qux_F_U14_G15NANNANT02.71 BB2S
0392qux_F_G15_G16NANNANT00.68 OP21
0402qux_F_G16_C17NANNANT00.41 OP11
0412qux_F_C17_U18AAAAA08810.23 AA08
0422qux_F_U18_U19AAAAA08880.16 AA08
0432qux_F_U19_C20AAAAA00780.20 AA00
0442qux_F_C20_G21AAAAA00800.12 AA00
0452qux_F_G21_U22AAAAA00750.08 AA00
0462qux_F_U22_G23AAAAA04950.13 AA04
0472qux_F_G23_C24AAAAA00800.17 AA00
0482qux_F_C24_C25AAAAA08670.28 AA08
0492qux_I_G1_G2AAAAA00790.21 AA00
0502qux_I_G2_C3AAAAA00840.18 AA00
0512qux_I_C3_A4AAAAA00770.23 AA00
0522qux_I_A4_C5AAAAA00720.23 AA00
0532qux_I_C5_A6NANNANT00.74 OP30
0542qux_I_A6_G7NANNANT01.32 OP31
0552qux_I_G7_A8AAAAA04760.32 AA04
0562qux_I_A8_A9AAAAA00850.16 AA00
0572qux_I_A9_G10AAAAA04870.24 AA04
0582qux_I_G10_A11AAAAA00690.27 AA00
0592qux_I_A11_U12OPNOP29690.14 OP29
0602qux_I_U12_A13NANNANT02.06 OP29
0612qux_I_A13_U14NANNANT01.31 OP13
0622qux_I_U14_G15NANNANT02.69 BB2S
0632qux_I_G15_G16NANNANT00.58 OP21
0642qux_I_G16_C17NANNANT00.30 OP11
0652qux_I_C17_U18AAAAA00710.21 AA00
0662qux_I_U18_U19AAAAA08740.22 AA08
0672qux_I_U19_C20AAAAA00820.20 AA00
0682qux_I_C20_G21AAAAA00880.15 AA00
0692qux_I_G21_U22AAAAA08920.18 AA08
0702qux_I_U22_G23AAAAA08750.16 AA08
0712qux_I_G23_C24AAAAA00820.15 AA00
0722qux_I_C24_C25AAAAA08610.30 AA08
0732qux_L_G1_G2AAAAA00620.21 AA00
0742qux_L_G2_C3AAAAA00600.19 AA00
0752qux_L_C3_A4AAAAA00890.11 AA00
0762qux_L_A4_C5AAAAA00840.26 AA00
0772qux_L_C5_A6NANNANT01.06 OP30
0782qux_L_A6_G7NANNANT00.63 OP27
0792qux_L_G7_A8AAAAA00470.29 AA00
0802qux_L_A8_A9AAAAA00920.13 AA00
0812qux_L_A9_G10AAAAA00790.17 AA00
0822qux_L_G10_A11AAAAA00500.26 AA00
0832qux_L_A11_U12NANNANT00.20 OP29
0842qux_L_U12_A13NANNANT02.06 OP29
0852qux_L_A13_U14NANNANT01.33 OP13
0862qux_L_U14_G15NANNANT02.77 BB2S
0872qux_L_G15_G16NANNANT00.76 OP21
0882qux_L_G16_C17NANNANT00.56 OP11
0892qux_L_C17_U18AAAAA08840.18 AA08
0902qux_L_U18_U19AAAAA08810.18 AA08
0912qux_L_U19_C20AAAAA00720.30 AA00
0922qux_L_C20_G21AAwAA01550.39 AA01
0932qux_L_G21_U22NANNANT00.67 AA10
0942qux_L_U22_G23AAAAA08250.50 AA08
0952qux_L_G23_C24AAAAA08810.18 AA08
0962qux_L_C24_C25AAAAA00720.22 AA00
0972qux_O_G1_G2AAAAA08730.27 AA08
0982qux_O_G2_C3NANNANT00.40 AA04
0992qux_O_C3_A4AAAAA00850.17 AA00
1002qux_O_A4_C5AAAAA00720.21 AA00
1012qux_O_C5_A6NANNANT00.89 OP30
1022qux_O_A6_G7NANNANT00.86 OP27
1032qux_O_G7_A8AAAAA00390.31 AA00
1042qux_O_A8_A9AAAAA00820.09 AA00
1052qux_O_A9_G10AAAAA00840.19 AA00
1062qux_O_G10_A11AAAAA00590.21 AA00
1072qux_O_A11_U12NANNANT00.19 OP29
1082qux_O_U12_A13NANNANT02.06 OP29
1092qux_O_A13_U14NANNANT01.07 OP21
1102qux_O_U14_G15NANNANT02.29 OP10
1112qux_O_G15_G16NANNANT00.64 OP21
1122qux_O_G16_C17NANNANT00.39 OP11
1132qux_O_C17_U18AAAAA00840.15 AA00
1142qux_O_U18_U19AAAAA08670.29 AA08
1152qux_O_U19_C20AAAAA04920.17 AA04
1162qux_O_C20_G21AAAAA00810.15 AA00
1172qux_O_G21_U22AAAAA08890.17 AA08
1182qux_O_U22_G23AAAAA00640.18 AA00
1192qux_O_G23_C24AAwAA10140.31 AA10
1202qux_O_C24_C25NANNANT00.51 AB05
1212qux_R_G1_G2AAAAA00790.12 AA00
1222qux_R_G2_C3AAAAA00940.11 AA00
1232qux_R_C3_A4AAAAA00790.11 AA00
1242qux_R_A4_C5AAAAA00860.14 AA00
1252qux_R_C5_A6NANNANT00.78 OP30
1262qux_R_A6_G7NANNANT01.36 OP31
1272qux_R_G7_A8AAAAA08510.30 AA08
1282qux_R_A8_A9AAAAA08830.18 AA08
1292qux_R_A9_G10AAAAA00770.21 AA00
1302qux_R_G10_A11AAAAA00580.25 AA00
1312qux_R_A11_U12NANNANT00.20 OP29
1322qux_R_U12_A13NANNANT02.08 OP29
1332qux_R_A13_U14NANNANT01.26 OP13
1342qux_R_U14_G15NANNANT02.25 OP02
1352qux_R_G15_G16NANNANT00.64 OP21
1362qux_R_G16_C17NANNANT00.44 OP11
1372qux_R_C17_U18AAAAA08710.27 AA08
1382qux_R_U18_U19AAAAA08880.25 AA08
1392qux_R_U19_C20AAAAA00810.18 AA00
1402qux_R_C20_G21AAAAA00720.17 AA00
1412qux_R_G21_U22AAAAA00830.11 AA00
1422qux_R_U22_G23AAAAA04860.16 AA04
1432qux_R_G23_C24AAAAA00730.18 AA00
1442qux_R_C24_C25NANNANT00.53 AA06

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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