DNATCO v4.1: results

Hammerhead Ribozyme G12A mutant pre-cleavage

Results of the assignment of 136 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	2qus_A_GTP1_G2	AAA	AA04	57	0.35	AA04
002	2qus_A_G2_G3	AAw	AA10	67	0.20	AA10
003	2qus_A_G3_A4	AAA	AA00	44	0.18	AA00
004	2qus_A_A4_G5	AAA	AA00	82	0.14	AA00
005	2qus_A_G5_C6	AAA	AA04	96	0.12	AA04
006	2qus_A_C6_C7	AAA	AA08	87	0.16	AA08
007	2qus_A_C7_C8	AAA	AA00	80	0.22	AA00
008	2qus_A_C8_U9	AAA	AA00	74	0.26	AA00
009	2qus_A_U9_G10	AAA	AA00	71	0.19	AA00
010	2qus_A_G10_U11	AAA	AA00	82	0.18	AA00
011	2qus_A_U11_C12	A-B	AB05	78	0.33	AB05
012	2qus_A_C12_A13	NAN	NANT	0	1.82	OP17
013	2qus_A_A13_C14	AAA	AA08	65	0.22	AA08
014	2qus_A_C14_C15	AAA	AA04	14	0.24	AA04
015	2qus_A_C15_G16	AAA	AA08	81	0.16	AA08
016	2qus_A_G16_G17	AAA	AA00	76	0.17	AA00
017	2qus_A_G17_A18	AAA	AA00	88	0.24	AA00
018	2qus_A_A18_U19	AAA	AA04	80	0.26	AA04
019	2qus_A_U19_G20	NAN	NANT	0	1.41	AA07
020	2qus_A_G20_U21	NAN	NANT	0	1.39	BB10
021	2qus_A_U21_G22	NAN	NANT	0	0.59	ZZ1S
022	2qus_A_G22_C23	NAN	NANT	0	0.98	AA11
023	2qus_A_C23_U24	NAN	NANT	0	0.93	BB20
024	2qus_A_U24_U25	NAN	NANT	0	1.89	OP17
025	2qus_A_U25_U26	NAN	NANT	0	0.74	AA13
026	2qus_A_U26_C27	AAA	AA00	89	0.12	AA00
027	2qus_A_C27_C28	AAA	AA08	62	0.27	AA08
028	2qus_A_C28_G29	AAA	AA00	81	0.15	AA00
029	2qus_A_G29_G30	AAA	AA08	72	0.19	AA08
030	2qus_A_G30_U31	AAA	AA00	86	0.15	AA00
031	2qus_A_U31_C32	A-B	AB05	79	0.29	AB05
032	2qus_A_C32_U33	NAN	NANT	0	0.54	BA17
033	2qus_A_U33_G34	NAN	NANT	0	1.42	OP18
034	2qus_A_G34_A35	AAA	AA00	68	0.27	AA00
035	2qus_A_A35_U36	NAN	NANT	0	0.84	IC03
036	2qus_A_U36_G37	NAN	NANT	0	0.54	ZZ02
037	2qus_A_G37_A38	NAN	NANT	0	0.48	OP06
038	2qus_A_A38_G39	AAA	AA04	86	0.25	AA04
039	2qus_A_G39_U40	AAA	AA08	71	0.26	AA08
040	2qus_A_U40_C41	AAA	AA00	65	0.22	AA00
041	2qus_A_C41_C42	AAA	AA00	58	0.21	AA00
042	2qus_A_C42_G43	AAA	AA00	69	0.24	AA00
043	2qus_A_G43_U44	NAN	NANT	0	0.73	AB05
044	2qus_A_U44_G45	NAN	NANT	0	1.08	OP21
045	2qus_A_G45_A46	NAN	NANT	0	1.35	BB08
046	2qus_A_A46_G47	NAN	NANT	0	0.95	OP19
047	2qus_A_G47_G48	AAA	AA00	35	0.23	AA00
048	2qus_A_G48_A49	AAA	AA03	76	0.17	AA03
049	2qus_A_A49_C50	AAA	AA08	89	0.17	AA08
050	2qus_A_C50_A51	NAN	NANT	0	0.54	AB05
051	2qus_A_A51_A52	OPN	OP10	29	0.33	OP10
052	2qus_A_A52_A53	AAA	AA08	71	0.33	AA08
053	2qus_A_A53_A54	AAA	AA00	75	0.24	AA00
054	2qus_A_A54_C55	AAA	AA00	82	0.19	AA00
055	2qus_A_C55_A56	AAA	AA03	82	0.12	AA03
056	2qus_A_A56_G57	AAA	AA00	83	0.21	AA00
057	2qus_A_G57_G58	AAA	AA00	80	0.12	AA00
058	2qus_A_G58_G59	AAA	AA00	87	0.12	AA00
059	2qus_A_G59_C60	AAA	AA00	81	0.13	AA00
060	2qus_A_C60_U61	AAA	AA00	79	0.20	AA00
061	2qus_A_U61_C62	AAw	AA01	41	0.24	AA01
062	2qus_A_C62_C63	AAA	AA03	93	0.15	AA03
063	2qus_A_C63_C64	AAA	AA00	92	0.13	AA00
064	2qus_A_C64_G65	AAA	AA00	71	0.29	AA00
065	2qus_A_G65_A66	AAA	AA08	83	0.18	AA08
066	2qus_A_A66_A67	AAA	AA00	81	0.18	AA00
067	2qus_A_A67_U68	AAA	AA08	79	0.22	AA08
068	2qus_A_U68_U69	AAA	AA08	61	0.19	AA08
069	2qus_B_GTP1_G2	AAA	AA00	71	0.15	AA00
070	2qus_B_G2_G3	AAw	AA01	75	0.17	AA01
071	2qus_B_G3_A4	AAA	AA00	55	0.18	AA00
072	2qus_B_A4_G5	AAA	AA00	69	0.18	AA00
073	2qus_B_G5_C6	AAA	AA00	90	0.16	AA00
074	2qus_B_C6_C7	AAA	AA00	50	0.35	AA00
075	2qus_B_C7_C8	AAA	AA00	66	0.25	AA00
076	2qus_B_C8_U9	AAA	AA00	75	0.19	AA00
077	2qus_B_U9_G10	AAA	AA00	93	0.16	AA00
078	2qus_B_G10_U11	AAA	AA00	89	0.19	AA00
079	2qus_B_U11_C12	A-B	AB05	76	0.38	AB05
080	2qus_B_C12_A13	NAN	NANT	0	1.88	OP17
081	2qus_B_A13_C14	AAA	AA08	93	0.18	AA08
082	2qus_B_C14_C15	AAA	AA00	50	0.18	AA00
083	2qus_B_C15_G16	AAA	AA08	53	0.19	AA08
084	2qus_B_G16_G17	AAA	AA00	71	0.19	AA00
085	2qus_B_G17_A18	AAA	AA00	70	0.25	AA00
086	2qus_B_A18_U19	AAA	AA00	59	0.34	AA00
087	2qus_B_U19_G20	NAN	NANT	0	0.47	IC04
088	2qus_B_G20_U21	NAN	NANT	0	1.06	OP07
089	2qus_B_U21_G22	NAN	NANT	0	1.68	BA17
090	2qus_B_G22_C23	NAN	NANT	0	2.25	ZZ2S
091	2qus_B_C23_U24	NAN	NANT	0	2.08	OP15
092	2qus_B_U24_U25	NAN	NANT	0	2.38	OP27
093	2qus_B_U25_U26	NAN	NANT	0	0.77	OP06
094	2qus_B_U26_C27	AAA	AA00	89	0.12	AA00
095	2qus_B_C27_C28	AAA	AA00	65	0.22	AA00
096	2qus_B_C28_G29	AAA	AA00	67	0.13	AA00
097	2qus_B_G29_G30	AAA	AA00	48	0.21	AA00
098	2qus_B_G30_U31	AAA	AA00	74	0.14	AA00
099	2qus_B_U31_C32	A-B	AB05	70	0.30	AB05
100	2qus_B_C32_U33	OPN	OP24	16	0.50	OP24
101	2qus_B_U33_G34	NAN	NANT	0	0.40	OP04
102	2qus_B_G34_A35	AAA	AA08	82	0.22	AA08
103	2qus_B_A35_U36	NAN	NANT	0	0.85	IC03
104	2qus_B_U36_G37	NAN	NANT	0	0.56	ZZ02
105	2qus_B_G37_A38	NAN	NANT	0	0.52	OP02
106	2qus_B_A38_G39	AAA	AA04	95	0.17	AA04
107	2qus_B_G39_U40	AAA	AA00	75	0.19	AA00
108	2qus_B_U40_C41	AAA	AA00	84	0.16	AA00
109	2qus_B_C41_C42	AAA	AA03	75	0.18	AA03
110	2qus_B_C42_G43	AAw	AA06	67	0.24	AA06
111	2qus_B_G43_U44	NAN	NANT	0	1.22	AA11
112	2qus_B_U44_G45	NAN	NANT	0	0.89	IC02
113	2qus_B_G45_A46	NAN	NANT	0	1.28	ZZ02
114	2qus_B_A46_G47	NAN	NANT	0	0.82	OP19
115	2qus_B_G47_G48	AAA	AA04	77	0.24	AA04
116	2qus_B_G48_A49	AAA	AA00	62	0.25	AA00
117	2qus_B_A49_C50	AAA	AA00	59	0.27	AA00
118	2qus_B_C50_A51	AAA	AA08	33	0.63	AA08
119	2qus_B_A51_A52	AAu	AA07	82	0.26	AA07
120	2qus_B_A52_A53	AAA	AA00	24	0.34	AA00
121	2qus_B_A53_A54	AAA	AA08	84	0.27	AA08
122	2qus_B_A54_C55	AAA	AA08	71	0.24	AA08
123	2qus_B_C55_A56	AAA	AA04	41	0.22	AA04
124	2qus_B_A56_G57	AAA	AA04	44	0.30	AA04
125	2qus_B_G57_G58	AAA	AA08	38	0.28	AA08
126	2qus_B_G58_G59	AAA	AA00	23	0.32	AA00
127	2qus_B_G59_C60	AAA	AA08	55	0.24	AA08
128	2qus_B_C60_U61	AAA	AA04	87	0.23	AA04
129	2qus_B_U61_C62	AAA	AA08	70	0.18	AA08
130	2qus_B_C62_C63	AAA	AA00	58	0.24	AA00
131	2qus_B_C63_C64	AAA	AA00	55	0.14	AA00
132	2qus_B_C64_G65	AAA	AA00	80	0.17	AA00
133	2qus_B_G65_A66	AAA	AA00	74	0.16	AA00
134	2qus_B_A66_A67	AAA	AA00	75	0.15	AA00
135	2qus_B_A67_U68	AAA	AA08	62	0.26	AA08
136	2qus_B_U68_U69	AAA	AA08	76	0.23	AA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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B

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N

Results of the assignment of 136 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Definitions

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