Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Human RNase H catalytic domain mutant D210N in complex with 18-mer RNA/DNA hybrid
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 34 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2qk9_B_A1_G2 | AAA | AA00 | 76 | 0.18 |
| 02 | 2qk9_B_G2_U3 | AAA | AA00 | 68 | 0.20 |
| 03 | 2qk9_B_U3_G4 | AAA | AA08 | 91 | 0.17 |
| 04 | 2qk9_B_G4_C5 | AAA | AA00 | 86 | 0.19 |
| 05 | 2qk9_B_C5_G6 | AAA | AA00 | 93 | 0.20 |
| 06 | 2qk9_B_G6_A7 | AAA | AA00 | 91 | 0.18 |
| 07 | 2qk9_B_A7_C8 | AAA | AA00 | 77 | 0.24 |
| 08 | 2qk9_B_C8_A9 | AAw | AA01 | 87 | 0.16 |
| 09 | 2qk9_B_A9_C10 | AAA | AA00 | 77 | 0.21 |
| 10 | 2qk9_B_C10_C11 | AAw | AA01 | 83 | 0.24 |
| 11 | 2qk9_B_C11_U12 | AAA | AA00 | 64 | 0.25 |
| 12 | 2qk9_B_U12_G13 | AAA | AA00 | 89 | 0.14 |
| 13 | 2qk9_B_G13_A14 | AAw | AA10 | 32 | 0.32 |
| 14 | 2qk9_B_A14_U15 | AAA | AA08 | 74 | 0.16 |
| 15 | 2qk9_B_U15_U16 | AAA | AA00 | 85 | 0.18 |
| 16 | 2qk9_B_U16_C17 | AAA | AA00 | 86 | 0.22 |
| 17 | 2qk9_B_C17_C18 | AAA | AA00 | 56 | 0.30 |
| 18 | 2qk9_C_DG19_DG20 | AAA | AA00 | 26 | 0.34 |
| 19 | 2qk9_C_DG20_DA21 | AAu | AA12 | 58 | 0.39 |
| 20 | 2qk9_C_DA21_DA22 | AAw | AA01 | 86 | 0.15 |
| 21 | 2qk9_C_DA22_DT23 | AAA | AA00 | 83 | 0.18 |
| 22 | 2qk9_C_DT23_DC24 | AAA | AA00 | 96 | 0.12 |
| 23 | 2qk9_C_DC24_DA25 | NAN | NANT | 0 | 0.56 |
| 24 | 2qk9_C_DA25_DG26 | NAN | NANT | 0 | 0.35 |
| 25 | 2qk9_C_DG26_DG27 | AAA | AA04 | 75 | 0.28 |
| 26 | 2qk9_C_DG27_DT28 | A-B | AB05 | 81 | 0.25 |
| 27 | 2qk9_C_DT28_DG29 | BBw | BB02 | 36 | 0.35 |
| 28 | 2qk9_C_DG29_DT30 | NAN | NANT | 0 | 0.69 |
| 29 | 2qk9_C_DT30_DC31 | AAA | AA00 | 10 | 0.47 |
| 30 | 2qk9_C_DC31_DG32 | AAA | AA02 | 10 | 0.35 |
| 31 | 2qk9_C_DG32_DC33 | NAN | NANT | 0 | 0.29 |
| 32 | 2qk9_C_DC33_DA34 | A-B | AB03 | 41 | 0.41 |
| 33 | 2qk9_C_DA34_DC35 | BBw | BB02 | 72 | 0.27 |
| 34 | 2qk9_C_DC35_DT36 | BBB | BB00 | 24 | 0.28 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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