DNATCO v4.1: results

Structure of the M-Box Riboswitch Aptamer Domain

Results of the assignment of 151 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	2qbz_X_G15_G16	AAA	AA08	81	0.18	AA08
002	2qbz_X_G16_G17	AAA	AA00	68	0.22	AA00
003	2qbz_X_G17_C18	AAA	AA00	89	0.14	AA00
004	2qbz_X_C18_U19	AAA	AA00	74	0.32	AA00
005	2qbz_X_U19_U20	AAA	AA00	85	0.24	AA00
006	2qbz_X_U20_C21	AAA	AA04	92	0.14	AA04
007	2qbz_X_C21_G22	NAN	NANT	0	1.00	OP12
008	2qbz_X_G22_U23	AAA	AA00	84	0.17	AA00
009	2qbz_X_U23_U24	NAN	NANT	0	0.99	OP04
010	2qbz_X_U24_A25	NAN	NANT	0	0.45	OP30
011	2qbz_X_A25_G26	AAA	AA08	8	0.57	AA08
012	2qbz_X_G26_G27	AAA	AA08	72	0.27	AA08
013	2qbz_X_G27_U28	AAA	AA08	20	0.23	AA08
014	2qbz_X_U28_G29	A-B	AB05	13	0.41	AB05
015	2qbz_X_G29_A30	NAN	NANT	0	0.80	OP15
016	2qbz_X_A30_G31	AAA	AA08	67	0.48	AA08
017	2qbz_X_G31_G32	AAA	AA00	67	0.25	AA00
018	2qbz_X_G32_C33	AAA	AA00	72	0.22	AA00
019	2qbz_X_C33_U34	A-B	AB04	57	0.30	AB04
020	2qbz_X_U34_C35	NAN	NANT	0	0.63	OP15
021	2qbz_X_C35_C36	NAN	NANT	0	0.60	AA00
022	2qbz_X_C36_U37	AAA	AA00	50	0.29	AA00
023	2qbz_X_U37_G38	AAA	AA03	88	0.14	AA03
024	2qbz_X_G38_U39	AAA	AA00	41	0.22	AA00
025	2qbz_X_U39_A40	AAA	AA04	82	0.28	AA04
026	2qbz_X_A40_U41	AAA	AA00	43	0.20	AA00
027	2qbz_X_U41_G42	AAA	AA08	53	0.29	AA08
028	2qbz_X_G42_G43	AAA	AA08	66	0.26	AA08
029	2qbz_X_G43_A44	AAA	AA08	80	0.21	AA08
030	2qbz_X_A44_G45	AAA	AA00	80	0.17	AA00
031	2qbz_X_G45_A46	NAN	NANT	0	0.64	AA07
032	2qbz_X_A46_U47	NAN	NANT	0	1.19	OP30
033	2qbz_X_U47_A48	NAN	NANT	0	1.55	OP17
034	2qbz_X_A48_C49	NAN	NANT	0	0.80	OP09
035	2qbz_X_C49_G50	OPN	OP12	29	0.54	OP12
036	2qbz_X_G50_C51	AAA	AA08	27	0.37	AA08
037	2qbz_X_C51_U52	AAA	AA00	59	0.28	AA00
038	2qbz_X_U52_G53	AAA	AA08	65	0.21	AA08
039	2qbz_X_G53_C54	AAA	AA00	82	0.15	AA00
040	2qbz_X_C54_U55	AAA	AA00	78	0.20	AA00
041	2qbz_X_U55_G56	AAA	AA00	85	0.20	AA00
042	2qbz_X_G56_C57	AAA	AA00	56	0.27	AA00
043	2qbz_X_C57_C58	AAA	AA00	86	0.12	AA00
044	2qbz_X_C58_C59	AAA	AA00	65	0.20	AA00
045	2qbz_X_C59_A60	AAA	AA00	82	0.14	AA00
046	2qbz_X_A60_A61	AAA	AA00	55	0.29	AA00
047	2qbz_X_A61_A62	ICL	IC07	48	0.29	IC07
048	2qbz_X_A62_A63	AAA	AA00	71	0.34	AA00
049	2qbz_X_A63_A64	AAA	AA00	77	0.24	AA00
050	2qbz_X_A64_U65	AAA	AA00	28	0.44	AA00
051	2qbz_X_U65_G66	AAA	AA00	61	0.32	AA00
052	2qbz_X_G66_U67	AAA	AA00	77	0.11	AA00
053	2qbz_X_U67_C68	AAA	AA00	74	0.18	AA00
054	2qbz_X_C68_C69	AAA	AA00	28	0.28	AA00
055	2qbz_X_C69_A70	OPN	OP04	62	0.39	OP04
056	2qbz_X_A70_A71	AAA	AA08	79	0.27	AA08
057	2qbz_X_A71_A72	AAA	AA00	52	0.27	AA00
058	2qbz_X_A72_G73	NAN	NANT	0	0.26	AA05
059	2qbz_X_G73_A74	AAA	AA04	61	0.23	AA04
060	2qbz_X_A74_C75	AAA	AA08	71	0.33	AA08
061	2qbz_X_C75_G76	AAA	AA00	75	0.23	AA00
062	2qbz_X_G76_C77	AAA	AA00	53	0.33	AA00
063	2qbz_X_C77_C78	AAA	AA00	86	0.28	AA00
064	2qbz_X_C78_A79	AAu	AA07	75	0.23	AA07
065	2qbz_X_A79_A80	AAA	AA00	87	0.14	AA00
066	2qbz_X_A80_U81	AAA	AA08	35	0.60	AA08
067	2qbz_X_U81_G82	AAA	AA00	90	0.09	AA00
068	2qbz_X_G82_G83	AAA	AA00	84	0.18	AA00
069	2qbz_X_G83_G84	AAA	AA00	70	0.25	AA00
070	2qbz_X_G84_U85	AAA	AA00	61	0.20	AA00
071	2qbz_X_U85_C86	NAN	NANT	0	0.63	OP21
072	2qbz_X_C86_A87	NAN	NANT	0	1.10	OP20
073	2qbz_X_A87_A88	NAN	NANT	0	0.84	OP14
074	2qbz_X_A88_C89	AAA	AA08	71	0.41	AA08
075	2qbz_X_C89_A90	ZZZ	ZZ01	31	0.20	ZZ01
076	2qbz_X_A90_G91	OPN	OP16	39	0.56	OP16
077	2qbz_X_G91_A92	AAA	AA00	34	0.28	AA00
078	2qbz_X_A92_A93	AAA	AA08	68	0.28	AA08
079	2qbz_X_A93_A94	AAA	AA08	70	0.24	AA08
080	2qbz_X_A94_U95	AAA	AA00	85	0.13	AA00
081	2qbz_X_U95_C96	AAA	AA00	82	0.17	AA00
082	2qbz_X_C96_A97	AAA	AA00	84	0.13	AA00
083	2qbz_X_A97_U98	AAA	AA00	82	0.17	AA00
084	2qbz_X_U98_C99	AAA	AA00	69	0.26	AA00
085	2qbz_X_C99_G100	AAA	AA00	40	0.28	AA00
086	2qbz_X_G100_A101	NAN	NANT	0	0.79	OP05
087	2qbz_X_A101_C102	NAN	NANT	0	1.08	OP12
088	2qbz_X_C102_A103	AAA	AA08	41	0.60	AA08
089	2qbz_X_A103_U104	AAA	AA08	17	0.73	AA08
090	2qbz_X_U104_A105	AAu	AA12	29	0.47	AA12
091	2qbz_X_A105_A106	AAA	AA00	58	0.34	AA00
092	2qbz_X_A106_G107	AAw	AA05	45	0.23	AA05
093	2qbz_X_G107_G108	AAA	AA00	55	0.26	AA00
094	2qbz_X_G108_U109	AAA	AA00	82	0.20	AA00
095	2qbz_X_U109_G110	AAA	AA00	93	0.13	AA00
096	2qbz_X_G110_A111	AAA	AA00	86	0.11	AA00
097	2qbz_X_A111_U112	AAA	AA00	88	0.12	AA00
098	2qbz_X_U112_U113	AAA	AA00	95	0.17	AA00
099	2qbz_X_U113_U114	AAw	AA01	24	0.22	AA01
100	2qbz_X_U114_U115	AAA	AA00	73	0.33	AA00
101	2qbz_X_U115_U116	AAA	AA00	49	0.26	AA00
102	2qbz_X_U116_A117	AAu	AA12	73	0.18	AA12
103	2qbz_X_A117_A118	NAN	NANT	0	0.98	OP06
104	2qbz_X_A118_U119	NAN	NANT	0	1.64	OP09
105	2qbz_X_U119_G120	NAN	NANT	0	1.63	OPS1
106	2qbz_X_G120_C121	AAA	AA00	78	0.15	AA00
107	2qbz_X_C121_A122	AAA	AA00	91	0.16	AA00
108	2qbz_X_A122_G123	AAA	AA00	87	0.13	AA00
109	2qbz_X_G123_C124	AAA	AA00	55	0.25	AA00
110	2qbz_X_C124_U125	AAA	AA00	85	0.16	AA00
111	2qbz_X_U125_G126	NAN	NANT	0	0.66	AA13
112	2qbz_X_G126_G127	NAN	NANT	0	0.54	AA03
113	2qbz_X_C136_C137	NAN	NANT	0	0.63	AA01
114	2qbz_X_C137_U138	A-B	AB05	62	0.36	AB05
115	2qbz_X_U138_A139	NAN	NANT	0	1.16	BB1S
116	2qbz_X_A139_U140	SYN	AAS1	54	0.25	AAS1
117	2qbz_X_U140_G141	NAN	NANT	0	0.71	AA08
118	2qbz_X_G141_C142	AAA	AA00	81	0.24	AA00
119	2qbz_X_C142_C143	AAA	AA00	81	0.20	AA00
120	2qbz_X_C143_A144	AAA	AA00	84	0.12	AA00
121	2qbz_X_A144_U145	NAN	NANT	0	0.43	AA01
122	2qbz_X_U145_A146	AAA	AA08	38	0.28	AA08
123	2qbz_X_A146_C147	AAA	AA08	44	0.35	AA08
124	2qbz_X_C147_A148	AAA	AA00	44	0.21	AA00
125	2qbz_X_A148_G149	AAA	AA04	80	0.25	AA04
126	2qbz_X_G149_U150	AAA	AA00	47	0.29	AA00
127	2qbz_X_U150_G151	AAA	AA00	71	0.20	AA00
128	2qbz_X_G151_C152	AAw	AA10	41	0.22	AA10
129	2qbz_X_C152_U153	AAA	AA08	85	0.24	AA08
130	2qbz_X_U153_A154	AAA	AA00	87	0.18	AA00
131	2qbz_X_A154_A155	NAN	NANT	0	1.13	OP30
132	2qbz_X_A155_A156	NAN	NANT	0	0.48	OP30
133	2qbz_X_A156_G157	AAA	AA00	26	0.43	AA00
134	2qbz_X_G157_C158	AAA	AA00	89	0.15	AA00
135	2qbz_X_C158_U159	AAA	AA00	62	0.24	AA00
136	2qbz_X_U159_C160	AAA	AA00	51	0.27	AA00
137	2qbz_X_C160_U161	AAA	AA00	51	0.28	AA00
138	2qbz_X_U161_A162	AAA	AA09	33	0.28	AA09
139	2qbz_X_A162_C163	AAw	AA01	18	0.38	AA01
140	2qbz_X_C163_G164	AAA	AA00	75	0.25	AA00
141	2qbz_X_G164_A165	NAN	NANT	0	0.76	AA07
142	2qbz_X_A165_U166	NAN	NANT	0	1.27	OP18
143	2qbz_X_U166_U167	OPN	OP12	63	0.40	OP12
144	2qbz_X_U167_G168	A-B	AB05	41	0.32	AB05
145	2qbz_X_G168_A169	NAN	NANT	0	0.44	BA08
146	2qbz_X_A169_A170	AAA	AA00	88	0.15	AA00
147	2qbz_X_A170_G171	NAN	NANT	0	0.55	AA01
148	2qbz_X_G171_C172	NAN	NANT	0	0.40	AA04
149	2qbz_X_C172_C173	AAA	AA00	84	0.21	AA00
150	2qbz_X_C173_C174	AAA	AA00	79	0.23	AA00
151	2qbz_X_C174_A175	NAN	NANT	0	1.19	IC06

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

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Results of the assignment of 151 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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