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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of a heterodimer of Cdc6/Orc1 initiators bound to origin DNA (from S. solfataricus)

Results of the assignment of 64 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012qby_C_DA1_DG2NANNANT00.57 BB03
022qby_C_DG2_DA3A-BAB01290.56 AB01
032qby_C_DA3_DT4B-ABA10710.25 BA10
042qby_C_DT4_DT5NANNANT00.48 AB02
052qby_C_DT5_DT6NANNANT00.47 BB02
062qby_C_DT6_DT7NANNANT00.62 BB02
072qby_C_DT7_DC8B12BB04300.26 BB04
082qby_C_DC8_DA9NANNANT00.65 BB02
092qby_C_DA9_DG10NANNANT00.65 BA08
102qby_C_DG10_DA11NANNANT00.45 AB01
112qby_C_DA11_DT12BBBBB00460.31 BB00
122qby_C_DT12_DG13BBwBB02550.23 BB02
132qby_C_DG13_DA14BBBBB00720.20 BB00
142qby_C_DA14_DA15B12BB04540.18 BB04
152qby_C_DA15_DA16B12BB04500.31 BB04
162qby_C_DA16_DC17NANNANT00.34 BB02
172qby_C_DC17_DG18B12BB04400.57 BB04
182qby_C_DG18_DT19BB2BB07630.34 BB07
192qby_C_DT19_DA20BB2BB07530.32 BB07
202qby_C_DA20_DG21miBBB15520.30 BB15
212qby_C_DG21_DG22B12BB04150.23 BB04
222qby_C_DG22_DA23BBBBB00730.19 BB00
232qby_C_DA23_DA24BBBBB00550.35 BB00
242qby_C_DA24_DA25BBBBB00830.08 BB00
252qby_C_DA25_DT26BBwBB02310.29 BB02
262qby_C_DT26_DT27NANNANT00.53 BB10
272qby_C_DT27_DT28BBBBB01680.16 BB01
282qby_C_DT28_DA29BBwBB02530.35 BB02
292qby_C_DA29_DC30B-ABA13300.45 BA13
302qby_C_DC30_DA31A-BAB05380.31 AB05
312qby_C_DA31_DC32BBBBB00700.22 BB00
322qby_C_DC32_DT33NANNANT00.42 BB02
332qby_D_DT1_DG2AAAAA08900.24 AA08
342qby_D_DG2_DT3A-BAB05440.41 AB05
352qby_D_DT3_DA4BBBBB00520.35 BB00
362qby_D_DA4_DA5BBBBB00650.24 BB00
372qby_D_DA5_DA6BBBBB00740.23 BB00
382qby_D_DA6_DT7BBBBB01520.17 BB01
392qby_D_DT7_DT8BBBBB00120.43 BB00
402qby_D_DT8_DT9BBBBB00700.22 BB00
412qby_D_DT9_DC10BBwBB02850.14 BB02
422qby_D_DC10_DC11BBBBB00290.32 BB00
432qby_D_DC11_DT12BBBBB00130.50 BB00
442qby_D_DT12_DA13NANNANT00.45 BB07
452qby_D_DA13_DC14NANNANT00.28 BA17
462qby_D_DC14_DG15BBBBB00300.52 BB00
472qby_D_DG15_DT16BBwBB0290.52 BB02
482qby_D_DT16_DT17NANNANT00.38 BB01
492qby_D_DT17_DT18BBwBB02380.22 BB02
502qby_D_DT18_DC19BBBBB01260.24 BB01
512qby_D_DC19_DA20NANNANT00.28 BB02
522qby_D_DA20_DT21miBBB10380.56 BB10
532qby_D_DT21_DC22BBwBB02380.26 BB02
542qby_D_DC22_DT23BBwBB02170.38 BB02
552qby_D_DT23_DG24B12BB04120.46 BB04
562qby_D_DG24_DA25B12BB04220.46 BB04
572qby_D_DA25_DA26B-ABA08380.42 BA08
582qby_D_DA26_DA27A-BAB02500.32 AB02
592qby_D_DA27_DA28B12BB04420.29 BB04
602qby_D_DA28_DT29NANNANT00.37 BB02
612qby_D_DT29_DC30BBBBB00440.38 BB00
622qby_D_DC30_DT31NANNANT00.54 BB10
632qby_D_DT31_DA32NANNANT00.35 BB10
642qby_D_DA32_DG33NANNANT00.55 BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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