Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of Chlorella virus DNA ligase-adenylate bound to a 5' phosphorylated nick
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 39 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2q2t_B_DT1_DT2 | BBB | BB00 | 56 | 0.23 |
| 02 | 2q2t_B_DT2_DC3 | BBB | BB00 | 90 | 0.20 |
| 03 | 2q2t_B_DC3_DC4 | BBB | BB00 | 88 | 0.12 |
| 04 | 2q2t_B_DC4_DG5 | B12 | BB04 | 85 | 0.16 |
| 05 | 2q2t_B_DG5_DA6 | BBB | BB00 | 94 | 0.10 |
| 06 | 2q2t_B_DA6_DT7 | BBw | BB02 | 86 | 0.18 |
| 07 | 2q2t_B_DT7_DA8 | BBB | BB00 | 83 | 0.21 |
| 08 | 2q2t_B_DA8_DG9 | BBB | BB00 | 95 | 0.17 |
| 09 | 2q2t_B_DG9_DT10 | B12 | BB04 | 22 | 0.51 |
| 10 | 2q2t_B_DT10_DG11 | BBB | BB00 | 17 | 0.32 |
| 11 | 2q2t_B_DG11_DG12 | NAN | NANT | 0 | 0.55 |
| 12 | 2q2t_B_DG12_DG13 | BBB | BB00 | 42 | 0.33 |
| 13 | 2q2t_B_DG13_DG14 | BBB | BB01 | 79 | 0.30 |
| 14 | 2q2t_B_DG14_DT15 | BBB | BB00 | 56 | 0.41 |
| 15 | 2q2t_B_DT15_DC16 | BBB | BB00 | 88 | 0.23 |
| 16 | 2q2t_B_DC16_DG17 | BBB | BB00 | 90 | 0.18 |
| 17 | 2q2t_B_DG17_DC18 | BBB | BB00 | 79 | 0.25 |
| 18 | 2q2t_B_DC18_DA19 | BB2 | BB07 | 70 | 0.20 |
| 19 | 2q2t_B_DA19_DA20 | BBB | BB00 | 97 | 0.09 |
| 20 | 2q2t_B_DA20_DT21 | BBB | BB00 | 96 | 0.17 |
| 21 | 2q2t_C_DA22_DT23 | BBw | BB02 | 74 | 0.22 |
| 22 | 2q2t_C_DT23_DT24 | BBB | BB00 | 74 | 0.19 |
| 23 | 2q2t_C_DT24_DG25 | BBB | BB00 | 85 | 0.19 |
| 24 | 2q2t_C_DG25_DC26 | B12 | BB04 | 82 | 0.20 |
| 25 | 2q2t_C_DC26_DG27 | B12 | BB04 | 96 | 0.11 |
| 26 | 2q2t_C_DG27_DA28 | BBB | BB00 | 95 | 0.13 |
| 27 | 2q2t_C_DA28_DC29 | BBw | BB02 | 91 | 0.13 |
| 28 | 2q2t_C_DC29_OMC30 | B-A | BA10 | 61 | 0.31 |
| 29 | 2q2t_C_OMC30_DC31 | NAN | NANT | 0 | 0.19 |
| 30 | 2q2t_D_DC32_DA33 | BBw | BB16 | 49 | 0.53 |
| 31 | 2q2t_D_DA33_DC34 | BBB | BB00 | 61 | 0.27 |
| 32 | 2q2t_D_DC34_DT35 | BBB | BB00 | 60 | 0.34 |
| 33 | 2q2t_D_DT35_DA36 | BBB | BB00 | 95 | 0.14 |
| 34 | 2q2t_D_DA36_DT37 | BBw | BB02 | 88 | 0.22 |
| 35 | 2q2t_D_DT37_DC38 | BBB | BB00 | 87 | 0.25 |
| 36 | 2q2t_D_DC38_DG39 | B12 | BB04 | 85 | 0.29 |
| 37 | 2q2t_D_DG39_DG40 | B12 | BB04 | 97 | 0.13 |
| 38 | 2q2t_D_DG40_DA41 | B12 | BB04 | 83 | 0.23 |
| 39 | 2q2t_D_DA41_DA42 | BBw | BB02 | 61 | 0.24 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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