Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Phi29 DNA polymerase complexed with single-stranded DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 21 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2py5_J_DG2_DA3 | NAN | NANT | 0 | 0.79 |
| 02 | 2py5_J_DA3_DC4 | BBw | BB16 | 87 | 0.18 |
| 03 | 2py5_J_DC4_DT5 | NAN | NANT | 0 | 1.00 |
| 04 | 2py5_J_DT5_DT6 | AAA | AA02 | 72 | 0.32 |
| 05 | 2py5_J_DT6_DT7 | NAN | NANT | 0 | 0.50 |
| 06 | 2py5_Y_DG1_DG2 | A-B | AB02 | 16 | 0.50 |
| 07 | 2py5_Y_DG2_DA3 | OPN | OP15 | 61 | 0.47 |
| 08 | 2py5_Y_DA3_DC4 | AAA | AA00 | 11 | 0.55 |
| 09 | 2py5_Y_DC4_DT5 | NAN | NANT | 0 | 0.55 |
| 10 | 2py5_D_DG1_DG2 | SYN | BBS1 | 72 | 0.29 |
| 11 | 2py5_D_DG2_DA3 | NAN | NANT | 0 | 1.05 |
| 12 | 2py5_D_DA3_DC4 | NAN | NANT | 0 | 1.14 |
| 13 | 2py5_D_DC4_DT5 | NAN | NANT | 0 | 0.41 |
| 14 | 2py5_D_DT5_DT6 | A-B | AB04 | 39 | 0.47 |
| 15 | 2py5_E_DG1_DG2 | SYN | BBS1 | 49 | 0.42 |
| 16 | 2py5_E_DG2_DA3 | NAN | NANT | 0 | 0.73 |
| 17 | 2py5_E_DA3_DC4 | NAN | NANT | 0 | 1.16 |
| 18 | 2py5_E_DC4_DT5 | A-B | AB04 | 32 | 0.45 |
| 19 | 2py5_L_DC4_DT5 | AAA | AA08 | 9 | 0.42 |
| 20 | 2py5_L_DT5_DT6 | AAA | AA02 | 76 | 0.27 |
| 21 | 2py5_L_DT6_DT7 | NAN | NANT | 0 | 0.50 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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