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Conformers: ABBIImiBZICOPNSYNN
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Variant 6 of Ribonucleoprotein Core of the E. Coli Signal Recognition Particle

Results of the assignment of 48 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012pxv_B_G130_G131AAAAA00650.20 AA00
022pxv_B_G131_U132AAAAA00720.33 AA00
032pxv_B_U132_G133AAwAA01740.33 AA01
042pxv_B_G133_G134AAAAA08750.22 AA08
052pxv_B_G134_U135AAAAA00800.14 AA00
062pxv_B_U135_G136AAAAA00860.14 AA00
072pxv_B_G136_U137AAAAA00670.28 AA00
082pxv_B_U137_U138AAAAA00830.19 AA00
092pxv_B_U138_U139AAAAA08640.26 AA08
102pxv_B_U139_A140NANNANT01.38 OP17
112pxv_B_A140_C141AAAAA00140.38 AA00
122pxv_B_C141_C142AAAAA00160.47 AA00
132pxv_B_C142_A143OPNOP06530.57 OP06
142pxv_B_A143_G144NANNANT00.60 OP30
152pxv_B_G144_G145AAAAA00730.28 AA00
162pxv_B_G145_U146AAAAA00820.20 AA00
172pxv_B_U146_C147AAAAA08690.36 AA08
182pxv_B_C147_A148AAuAA13970.15 AA13
192pxv_B_A148_G149AAAAA08120.55 AA08
202pxv_B_G149_G150AAAAA00520.39 AA00
212pxv_B_G150_U151AAAAA00750.24 AA00
222pxv_B_U151_C152AAAAA00720.30 AA00
232pxv_B_C152_C153AAAAA00890.15 AA00
242pxv_B_C153_G154AAAAA00890.21 AA00
252pxv_B_G154_A155OPNOP03780.13 OP03
262pxv_B_A155_A156AAAAA00380.42 AA00
272pxv_B_A156_A157AAAAA00260.40 AA00
282pxv_B_A157_G158AAwAA05850.26 AA05
292pxv_B_G158_G159AAwAA01520.27 AA01
302pxv_B_G159_A160AAAAA08470.32 AA08
312pxv_B_A160_A161AAAAA08740.28 AA08
322pxv_B_A161_G162AAAAA00200.50 AA00
332pxv_B_G162_C163AAuAA12790.35 AA12
342pxv_B_C163_A164AAAAA08880.15 AA08
352pxv_B_A164_G165AAAAA00470.47 AA00
362pxv_B_G165_C166AAAAA00550.35 AA00
372pxv_B_C166_C167AAAAA00940.15 AA00
382pxv_B_C167_A168AAAAA08570.33 AA08
392pxv_B_A168_A169AAAAA00430.33 AA00
402pxv_B_A169_G170AAAAA00820.16 AA00
412pxv_B_G170_G171AAAAA00830.26 AA00
422pxv_B_G171_C172AAAAA00740.26 AA00
432pxv_B_C172_A173AAwAA01810.18 AA01
442pxv_B_A173_C174AAAAA00690.22 AA00
452pxv_B_C174_U175AAAAA00650.27 AA00
462pxv_B_U175_G176AAuAA12900.23 AA12
472pxv_B_G176_C177AAAAA00560.30 AA00
482pxv_B_C177_C178AAAAA00930.22 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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