Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Variant 8 of Ribonucleoprotein Core of the E. Coli Signal Recognition Particle

Results of the assignment of 48 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012pxk_B_G130_G131AAAAA00590.22 AA00
022pxk_B_G131_G132AAAAA00760.22 AA00
032pxk_B_G132_U133AAAAA00690.33 AA00
042pxk_B_U133_G134AAAAA00810.19 AA00
052pxk_B_G134_U135AAAAA00890.12 AA00
062pxk_B_U135_G136AAAAA00870.12 AA00
072pxk_B_G136_U137AAAAA00760.19 AA00
082pxk_B_U137_U138AAAAA00910.15 AA00
092pxk_B_U138_U139AAAAA00550.23 AA00
102pxk_B_U139_A140NANNANT01.41 OP17
112pxk_B_A140_C141AAAAA08820.13 AA08
122pxk_B_C141_C142AAAAA0060.62 AA00
132pxk_B_C142_A143OPNOP06460.59 OP06
142pxk_B_A143_G144NANNANT00.65 OP29
152pxk_B_G144_G145AAAAA00670.20 AA00
162pxk_B_G145_U146AAAAA00830.18 AA00
172pxk_B_U146_C147AAAAA08710.46 AA08
182pxk_B_C147_A148AAuAA13810.21 AA13
192pxk_B_A148_G149AAAAA04210.68 AA04
202pxk_B_G149_G150AAAAA00570.37 AA00
212pxk_B_G150_U151AAAAA00640.27 AA00
222pxk_B_U151_C152AAAAA00830.28 AA00
232pxk_B_C152_C153AAAAA08930.14 AA08
242pxk_B_C153_G154AAAAA00800.25 AA00
252pxk_B_G154_A155OPNOP04600.33 OP04
262pxk_B_A155_A156AAAAA08770.31 AA08
272pxk_B_A156_A157AAAAA00220.34 AA00
282pxk_B_A157_G158AAwAA05790.29 AA05
292pxk_B_G158_G159AAwAA06840.21 AA06
302pxk_B_G159_A160AAAAA08690.23 AA08
312pxk_B_A160_A161AAAAA08830.30 AA08
322pxk_B_A161_G162AAAAA00420.53 AA00
332pxk_B_G162_C163AAuAA12660.48 AA12
342pxk_B_C163_A164AAAAA00710.28 AA00
352pxk_B_A164_G165AAAAA00540.42 AA00
362pxk_B_G165_C166AAAAA00520.32 AA00
372pxk_B_C166_C167AAAAA00800.15 AA00
382pxk_B_C167_A168AAAAA00470.35 AA00
392pxk_B_A168_A169AAAAA00540.30 AA00
402pxk_B_A169_G170AAAAA00920.16 AA00
412pxk_B_G170_G171AAAAA00640.22 AA00
422pxk_B_G171_C172AAAAA00720.24 AA00
432pxk_B_C172_A173AAwAA01880.13 AA01
442pxk_B_A173_C174AAAAA08900.19 AA08
452pxk_B_C174_G175AAAAA00860.15 AA00
462pxk_B_G175_U176AAAAA00870.18 AA00
472pxk_B_U176_C177AAAAA00860.15 AA00
482pxk_B_C177_C178AAAAA00690.18 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N