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Conformers: ABBIImiBZICOPNSYNN
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Variant 5 of Ribonucleoprotein Core of the E. Coli Signal Recognition Particle

Results of the assignment of 48 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012pxf_B_G130_G131AAAAA00560.21 AA00
022pxf_B_G131_G132AAAAA08590.28 AA08
032pxf_B_G132_G133AAAAA00800.25 AA00
042pxf_B_G133_G134AAAAA00840.22 AA00
052pxf_B_G134_U135AAAAA00860.11 AA00
062pxf_B_U135_G136AAAAA08850.18 AA08
072pxf_B_G136_U137AAAAA00760.24 AA00
082pxf_B_U137_U138AAAAA00940.16 AA00
092pxf_B_U138_U139AAAAA00570.23 AA00
102pxf_B_U139_A140NANNANT01.35 OP17
112pxf_B_A140_C141AAAAA08360.25 AA08
122pxf_B_C141_C142AAAAA00120.53 AA00
132pxf_B_C142_A143OPNOP06650.58 OP06
142pxf_B_A143_G144NANNANT00.65 OP30
152pxf_B_G144_G145AAAAA00790.17 AA00
162pxf_B_G145_U146AAAAA00870.14 AA00
172pxf_B_U146_C147AAAAA08750.36 AA08
182pxf_B_C147_A148AAuAA13650.29 AA13
192pxf_B_A148_G149AAAAA08130.56 AA08
202pxf_B_G149_G150AAAAA00620.34 AA00
212pxf_B_G150_U151AAAAA00760.35 AA00
222pxf_B_U151_C152AAAAA00750.30 AA00
232pxf_B_C152_C153AAAAA00910.12 AA00
242pxf_B_C153_G154AAAAA00840.24 AA00
252pxf_B_G154_A155OPNOP04550.34 OP04
262pxf_B_A155_A156AAAAA08800.33 AA08
272pxf_B_A156_A157AAAAA08590.36 AA08
282pxf_B_A157_G158AAwAA05510.32 AA05
292pxf_B_G158_G159AAwAA01640.30 AA01
302pxf_B_G159_A160AAAAA08470.29 AA08
312pxf_B_A160_A161AAAAA08800.25 AA08
322pxf_B_A161_G162AAAAA00140.50 AA00
332pxf_B_G162_C163AAuAA12810.44 AA12
342pxf_B_C163_A164AAAAA00830.23 AA00
352pxf_B_A164_G165AAAAA00610.47 AA00
362pxf_B_G165_C166AAAAA08850.17 AA08
372pxf_B_C166_C167AAAAA00810.20 AA00
382pxf_B_C167_A168AAAAA00310.42 AA00
392pxf_B_A168_A169AAAAA00650.31 AA00
402pxf_B_A169_G170AAAAA00890.14 AA00
412pxf_B_G170_G171AAAAA00720.26 AA00
422pxf_B_G171_C172AAAAA00500.27 AA00
432pxf_B_C172_A173AAwAA06870.30 AA06
442pxf_B_A173_C174AAAAA00750.20 AA00
452pxf_B_C174_U175AAAAA00930.20 AA00
462pxf_B_U175_U176AAAAA00930.14 AA00
472pxf_B_U176_C177AAAAA00780.21 AA00
482pxf_B_C177_C178AAAAA00800.19 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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