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Conformers: ABBIImiBZICOPNSYNN
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CRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO DNA: MINOR GROOVE BINDING BY ALPHA HELICES

Results of the assignment of 16 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012pud_B_DT699_DA700NANNANT00.69 BA08
022pud_B_DA700_DC701NANNANT00.58 BB14
032pud_B_DC701_DG702NANNANT00.61 BB02
042pud_B_DG702_DC703NANNANT00.55 BB02
052pud_B_DC703_DA704NANNANT00.49 BB15
062pud_B_DA704_DA705BB2BB07390.24 BB07
072pud_B_DA705_DA706B-ABA08460.38 BA08
082pud_B_DA706_DC707B-ABA08310.36 BA08
092pud_B_DC707_DG708NANNANT00.62 AB03
102pud_B_DG708_DT709B-ABA10800.34 BA10
112pud_B_DT709_DT710A-BAB01140.40 AB01
122pud_B_DT710_DT711BBBBB00170.26 BB00
132pud_B_DT711_DG712BB2BB07640.23 BB07
142pud_B_DG712_DC713NANNANT00.43 BA10
152pud_B_DC713_DG714NANNANT00.59 BB02
162pud_B_DG714_DT715NANNANT00.54 AB03

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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