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Conformers: ABBIImiBZICOPNSYNN
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CRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO DNA: MINOR GROOVE BINDING BY ALPHA HELICES

Results of the assignment of 16 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012puc_B_DT699_DA700NANNANT00.63 BA05
022puc_B_DA700_DC701NANNANT00.59 BB14
032puc_B_DC701_DG702NANNANT00.62 BB02
042puc_B_DG702_DC703NANNANT00.41 BB15
052puc_B_DC703_DA704NANNANT00.48 BB15
062puc_B_DA704_DA705BB2BB07360.25 BB07
072puc_B_DA705_DA706B-ABA08630.36 BA08
082puc_B_DA706_DC707AAAAA02140.44 AA02
092puc_B_DC707_DG708NANNANT00.64 AB03
102puc_B_DG708_DT709B-ABA10760.36 BA10
112puc_B_DT709_DT710A-BAB0170.42 AB01
122puc_B_DT710_DT711miBBB15470.34 BB15
132puc_B_DT711_DG712BB2BB07590.26 BB07
142puc_B_DG712_DC713NANNANT00.52 BB11
152puc_B_DC713_DG714NANNANT00.60 BB02
162puc_B_DG714_DT715NANNANT00.56 AB03

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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