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Conformers: ABBIImiBZICOPNSYNN
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Structure of the mRNA binding fragment of elongation factor SelB in complex with SECIS RNA.

Results of the assignment of 44 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012ply_C_G13_G14AAAAA04220.41 AA04
022ply_C_G14_C15AAAAA04630.35 AA04
032ply_C_C15_G16AAAAA00880.14 AA00
042ply_C_G16_U17AAAAA00520.13 AA00
052ply_C_U17_U18AAAAA00740.21 AA00
062ply_C_U18_G19AAAAA00550.13 AA00
072ply_C_G19_C20AAAAA08410.27 AA08
082ply_C_C20_C21AAAAA03770.26 AA03
092ply_C_C21_G22AAAAA00720.28 AA00
102ply_C_G22_G23NANNANT01.13 IC04
112ply_C_G23_U24NANNANT00.72 BB20
122ply_C_U24_C25NANNANT01.36 BA16
132ply_C_C25_U26NANNANT01.30 OP29
142ply_C_U26_G27NANNANT01.09 OP17
152ply_C_G27_G28AAAAA03740.21 AA03
162ply_C_G28_C29AAAAA04860.16 AA04
172ply_C_C29_A30AAAAA00800.15 AA00
182ply_C_A30_A31AAAAA00620.18 AA00
192ply_C_A31_C32AAAAA04680.24 AA04
202ply_C_C32_G33AAAAA04880.20 AA04
212ply_C_G33_C34AAAAA00840.14 AA00
222ply_C_C34_C35AAAAA00460.35 AA00
232ply_E_G13_G14AAAAA00810.25 AA00
242ply_E_G14_C15AAAAA00600.22 AA00
252ply_E_C15_G16AAAAA00560.29 AA00
262ply_E_G16_U17AAAAA00800.20 AA00
272ply_E_U17_U18AAAAA08230.23 AA08
282ply_E_U18_G19AAAAA04640.24 AA04
292ply_E_G19_C20AAAAA00770.12 AA00
302ply_E_C20_C21AAAAA00380.20 AA00
312ply_E_C21_G22AAAAA08830.28 AA08
322ply_E_G22_G23NANNANT01.45 IC06
332ply_E_G23_U24NANNANT01.31 AA12
342ply_E_U24_C25NANNANT01.07 ZZ02
352ply_E_C25_U26NANNANT01.18 IC04
362ply_E_U26_G27NANNANT01.68 OP11
372ply_E_G27_G28AAAAA00540.21 AA00
382ply_E_G28_C29AAAAA03520.20 AA03
392ply_E_C29_A30NANNANT00.33 AA10
402ply_E_A30_A31AAAAA04550.25 AA04
412ply_E_A31_C32AAAAA00530.22 AA00
422ply_E_C32_G33AAAAA08750.23 AA08
432ply_E_G33_C34AAAAA00630.20 AA00
442ply_E_C34_C35AAAAA00850.27 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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