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Conformers: ABBIImiBZICOPNSYNN
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Crystal Structure of IRF-3 bound to the PRDIII-I regulatory element of the human interferon-B enhancer

Results of the assignment of 62 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012pi0_E_DC2_DA3NANNANT00.42 AB04
022pi0_E_DA3_DT4A-BAB01170.32 AB01
032pi0_E_DT4_DA5BBBBB00750.22 BB00
042pi0_E_DA5_DG6BBBBB00720.18 BB00
052pi0_E_DG6_DG7NANNANT00.36 BB15
062pi0_E_DG7_DA8NANNANT00.43 BB00
072pi0_E_DA8_DA9BBBBB00490.15 BB00
082pi0_E_DA9_DA10BBBBB00690.17 BB00
092pi0_E_DA10_DA11B12BB04320.24 BB04
102pi0_E_DA11_DC12NANNANT00.19 BA05
112pi0_E_DC12_DT13AAAAA00240.48 AA00
122pi0_E_DT13_DG14A-BAB01640.18 AB01
132pi0_E_DG14_DA15BBBBB00790.19 BB00
142pi0_E_DA15_DA16BBBBB00740.22 BB00
152pi0_E_DA16_DA17B12BB04730.14 BB04
162pi0_E_DA17_DG18BBBBB00520.21 BB00
172pi0_E_DG18_DG19B-ABA05480.24 BA05
182pi0_E_DG19_DG20A-BAB03780.29 AB03
192pi0_E_DG20_DA21B12BB04760.20 BB04
202pi0_E_DA21_DG22BBBBB00590.32 BB00
212pi0_E_DG22_DA23BB2BB07810.26 BB07
222pi0_E_DA23_DA24BBBBB01720.23 BB01
232pi0_E_DA24_DG25B-ABA01200.22 BA01
242pi0_E_DG25_DT26AAAAA00430.28 AA00
252pi0_E_DT26_DG27A-BAB01250.20 AB01
262pi0_E_DG27_DA28BBBBB00530.25 BB00
272pi0_E_DA28_DA29BBBBB00680.23 BB00
282pi0_E_DA29_DA30NANNANT00.34 BB08
292pi0_E_DA30_DG31BBBBB00580.24 BB00
302pi0_E_DG31_DT32BBBBB01810.23 BB01
312pi0_E_DT32_DG33BBBBB01460.49 BB01
322pi0_F_DC2_DA3BBBBB00320.74 BB00
332pi0_F_DA3_DC4miBBB12770.40 BB12
342pi0_F_DC4_DT5BBwBB16720.48 BB16
352pi0_F_DT5_DT6BBBBB00170.29 BB00
362pi0_F_DT6_DT7BBBBB01470.22 BB01
372pi0_F_DT7_DC8BBBBB01860.12 BB01
382pi0_F_DC8_DA9BBBBB00550.26 BB00
392pi0_F_DA9_DC10NANNANT00.26 BA09
402pi0_F_DC10_DT11NANNANT00.22 AB05
412pi0_F_DT11_DT12BBBBB00810.22 BB00
422pi0_F_DT12_DC13B-ABA17900.15 BA17
432pi0_F_DC13_DT14NANNANT00.46 BB01
442pi0_F_DT14_DC15BBBBB01610.28 BB01
452pi0_F_DC15_DC16BBBBB00420.54 BB00
462pi0_F_DC16_DC17miBBB12750.33 BB12
472pi0_F_DC17_DT18NANNANT00.51 BB16
482pi0_F_DT18_DT19BBBBB01750.23 BB01
492pi0_F_DT19_DT20BBBBB00580.34 BB00
502pi0_F_DT20_DC21BBBBB01740.18 BB01
512pi0_F_DC21_DA22BBBBB00280.38 BB00
522pi0_F_DA22_DG23miBBB12920.20 BB12
532pi0_F_DG23_DT24BBwBB16550.59 BB16
542pi0_F_DT24_DT25NANNANT00.45 BB03
552pi0_F_DT25_DT26BBBBB00730.20 BB00
562pi0_F_DT26_DT27BBBBB00170.24 BB00
572pi0_F_DT27_DC28A-BAB03560.29 AB03
582pi0_F_DC28_DC29NANNANT00.36 BA09
592pi0_F_DC29_DT30A-BAB05530.27 AB05
602pi0_F_DT30_DA31BBBBB00840.19 BB00
612pi0_F_DA31_DT32BBBBB00630.23 BB00
622pi0_F_DT32_DG33NANNANT00.71 BB16

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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