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Conformers: ABBIImiBZICOPNSYNN
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DNA Polymerase lambda in complex with DNA and dUPNPP

Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012pfo_T_DC1_DG2BBBBB00770.38 BB00
022pfo_T_DG2_DG3BB2BB07870.17 BB07
032pfo_T_DG3_DC4BBBBB00510.30 BB00
042pfo_T_DC4_DA5NANNANT01.17 OP21
052pfo_T_DA5_DG6BBBBB00640.23 BB00
062pfo_T_DG6_DT7B-ABA01460.24 BA01
072pfo_T_DT7_DA8A-BAB01570.25 AB01
082pfo_T_DA8_DC9BBwBB03600.35 BB03
092pfo_T_DC9_DT10BBBBB00300.35 BB00
102pfo_T_DT10_DG11BBBBB00550.36 BB00
112pfo_P_DC1_DA2A-BAB01570.25 AB01
122pfo_P_DA2_DG3BBBBB01790.18 BB01
132pfo_P_DG3_DT4B-ABA05740.17 BA05
142pfo_P_DT4_DA5BBBBB01510.23 BB01
152pfo_P_DA5_DC6AAAAA02130.45 AA02
162pfo_D_DG1_DC2A-BAB05480.27 AB05
172pfo_D_DC2_DC3BBBBB00870.13 BB00
182pfo_D_DC3_DG4B12BB04870.19 BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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