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Conformers: ABBIImiBZICOPNSYNN
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Human DNA Polymerase beta complexed with tetrahydrofuran (abasic site) containing DNA

Results of the assignment of 29 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012p66_B_DC1_DC2BBBBB00510.27 BB00
022p66_B_DC2_DG3B12BB04810.15 BB04
032p66_B_DG3_DA4BBBBB00650.22 BB00
042p66_B_DA4_DC5BBBBB00550.29 BB00
052p66_B_DC5_DA6NANNANT01.24 OP21
062p66_B_DA6_DG7BBBBB00580.31 BB00
072p66_B_DG7_DC8B12BB04780.18 BB04
082p66_B_DC8_DG9B12BB04490.29 BB04
092p66_B_DG9_DC10BBBBB01490.23 BB01
102p66_B_DC10_DA11BBBBB00230.20 BB00
112p66_B_DA11_DT12BBBBB00680.26 BB00
122p66_B_DT12_DC13BBBBB00580.27 BB00
132p66_B_DC13_DA14BBBBB00530.24 BB00
142p66_B_DA14_DG15BBBBB00750.12 BB00
152p66_B_DG15_DC16B-ABA01440.26 BA01
162p66_C_DG1_DC2BBBBB00750.18 BB00
172p66_C_DC2_DT3B12BB04720.28 BB04
182p66_C_DT3_DG4BBBBB00650.20 BB00
192p66_C_DG4_DA5BBBBB00750.33 BB00
202p66_C_DA5_DT6BBBBB00880.19 BB00
212p66_C_DT6_DG7B12BB04850.23 BB04
222p66_C_DG7_DC8BBBBB01400.25 BB01
232p66_C_DC8_DG9BBBBB01510.26 BB01
242p66_C_DG9_DC10BBBBB00640.32 BB00
252p66_C_DC10_DC11NANNANT00.83 IC03
262p66_D_DG1_DT2BBBBB00670.22 BB00
272p66_D_DT2_DC3BBBBB00870.20 BB00
282p66_D_DC3_DG4BBBBB00790.19 BB00
292p66_D_DG4_DG5BBBBB00530.26 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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