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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of RB69 GP43 in complex with DNA containing an abasic site analog

Results of the assignment of 99 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012p5o_E_DC1_DG2BBwBB16290.41 BB16
022p5o_E_DC4_DT5BBwBB11640.52 BB11
032p5o_E_DT5_DT6BBBBB00660.27 BB00
042p5o_E_DT6_DA7BBwBB02740.24 BB02
052p5o_E_DA7_DT8BBBBB00800.33 BB00
062p5o_E_DT8_DG9BBBBB00850.16 BB00
072p5o_E_DG9_DA10BBBBB00650.36 BB00
082p5o_E_DA10_DC11BBwBB02520.25 BB02
092p5o_E_DC11_DA12BBBBB00780.24 BB00
102p5o_E_DA12_DG13BBBBB00910.16 BB00
112p5o_E_DG13_DC14miBBB10920.33 BB10
122p5o_E_DC14_DC15BBBBB00680.34 BB00
132p5o_E_DC15_DG16BBwBB11830.33 BB11
142p5o_E_DG16_DC17BBwBB02410.55 BB02
152p5o_E_DC17_DG18NANNANT02.27 BB2S
162p5o_F_DG101_DC102BBBBB00880.20 BB00
172p5o_F_DC102_DG103BB2BB07690.32 BB07
182p5o_F_DG103_DG104BBBBB00890.22 BB00
192p5o_F_DG104_DC105BBwBB02800.12 BB02
202p5o_F_DC105_DT106B12BB04790.25 BB04
212p5o_F_DT106_DG107BBBBB00770.21 BB00
222p5o_F_DG107_DT108B12BB04890.23 BB04
232p5o_F_DT108_DC109BBwBB02910.16 BB02
242p5o_F_DC109_DA110BBwBB02850.24 BB02
252p5o_F_DA110_DT111BBBBB00820.20 BB00
262p5o_F_DT111_DA112BBwBB02500.41 BB02
272p5o_F_DA112_DA113BBBBB00300.62 BB00
282p5o_F_DA113_DG114BBBBB00580.31 BB00
292p5o_F_DG114_DA115NANNANT00.63 BB02
302p5o_G_DT6_DA7NANNANT01.57 IC04
312p5o_G_DA7_DT8NANNANT00.74 AB02
322p5o_G_DT8_DG9B12BB04570.19 BB04
332p5o_G_DG9_DA10B12BB04850.17 BB04
342p5o_G_DA10_DC11BBBBB00800.31 BB00
352p5o_G_DC11_DA12BBwBB11640.30 BB11
362p5o_G_DA12_DG13BBwBB02250.50 BB02
372p5o_G_DG13_DC14BBBBB00720.31 BB00
382p5o_G_DC14_DC15BBBBB00850.22 BB00
392p5o_G_DC15_DG16BBBBB00500.32 BB00
402p5o_G_DG16_DC17BB2BB08610.40 BB08
412p5o_G_DC17_DG18NANNANT02.79 OP1S
422p5o_H_DG101_DC102BBBBB00900.19 BB00
432p5o_H_DC102_DG103B12BB04910.23 BB04
442p5o_H_DG103_DG104BBBBB00920.17 BB00
452p5o_H_DG104_DC105miBBB13650.30 BB13
462p5o_H_DC105_DT106BBwBB02250.45 BB02
472p5o_H_DT106_DG107B12BB04580.32 BB04
482p5o_H_DG107_DT108B12BB04800.28 BB04
492p5o_H_DT108_DC109BBwBB02470.22 BB02
502p5o_H_DC109_DA110BBwBB03760.22 BB03
512p5o_H_DA110_DT111NANNANT00.57 BB02
522p5o_H_DT111_DA112NANNANT01.15 BB04
532p5o_H_DA112_DA113NANNANT00.99 BB03
542p5o_H_DA113_DG114NANNANT00.41 BB02
552p5o_H_DG114_DA115NANNANT00.84 AB03
562p5o_I_DC1_DG2BBwBB16210.44 BB16
572p5o_I_DC4_DT5BBBBB00660.36 BB00
582p5o_I_DT5_DT6BBBBB00840.20 BB00
592p5o_I_DT6_DA7NANNANT00.47 BA10
602p5o_I_DA7_DT8NANNANT00.44 AB02
612p5o_I_DT8_DG9BBBBB00570.26 BB00
622p5o_I_DG9_DA10B12BB04580.32 BB04
632p5o_I_DA10_DC11BBBBB01740.28 BB01
642p5o_I_DC11_DA12BBBBB00580.40 BB00
652p5o_I_DA12_DG13BBBBB00930.15 BB00
662p5o_I_DG13_DC14B12BB04610.17 BB04
672p5o_I_DC14_DC15BBBBB00690.19 BB00
682p5o_I_DC15_DG16BBBBB00800.21 BB00
692p5o_I_DG16_DC17BBBBB00800.28 BB00
702p5o_I_DC17_DG18NANNANT01.11 OP17
712p5o_J_DG101_DC102miBBB13580.35 BB13
722p5o_J_DC102_DG103BBwBB16860.40 BB16
732p5o_J_DG103_DG104BBBBB00870.14 BB00
742p5o_J_DG104_DC105NANNANT00.36 BB02
752p5o_J_DC105_DT106BBBBB00650.30 BB00
762p5o_J_DT106_DG107BBBBB00910.13 BB00
772p5o_J_DG107_DT108BBBBB00920.20 BB00
782p5o_J_DT108_DC109BBBBB00920.18 BB00
792p5o_J_DC109_DA110BBBBB00880.17 BB00
802p5o_J_DA110_DT111BBBBB00690.20 BB00
812p5o_J_DT111_DA112B12BB04440.18 BB04
822p5o_J_DA112_DA113BBBBB00430.38 BB00
832p5o_J_DA113_DG114BBwBB11480.47 BB11
842p5o_J_DG114_DA115NANNANT00.60 BB02
852p5o_K_DA10_DC11BBBBB00180.53 BB00
862p5o_K_DC11_DA12BBBBB00780.29 BB00
872p5o_K_DA12_DG13BBBBB00840.25 BB00
882p5o_K_DG13_DC14BBBBB00620.45 BB00
892p5o_K_DC14_DC15NANNANT00.45 BB03
902p5o_K_DC15_DG16B12BB04490.44 BB04
912p5o_K_DG16_DC17BBBBB00540.36 BB00
922p5o_K_DC17_DG18NANNANT01.12 OP17
932p5o_L_DG101_DC102NANNANT00.53 BB02
942p5o_L_DC102_DG103B12BB04310.55 BB04
952p5o_L_DG103_DG104BBBBB00780.30 BB00
962p5o_L_DG104_DC105BBwBB02370.34 BB02
972p5o_L_DC105_DT106BBBBB00760.20 BB00
982p5o_L_DT106_DG107B12BB04880.28 BB04
992p5o_L_DG107_DT108BBBBB00460.39 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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