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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of RB69 gp43 in complex with DNA with dATP opposite dTMP

Results of the assignment of 29 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012ozs_T_DC1_DG2NANNANT01.94 OP19
022ozs_T_DG2_DT3NANNANT01.06 OP17
032ozs_T_DT3_DC4AAAAA00900.15 AA00
042ozs_T_DC4_DT5A-BAB05590.34 AB05
052ozs_T_DT5_DT6miBBB15620.31 BB15
062ozs_T_DT6_DA7B-ABA05850.19 BA05
072ozs_T_DA7_DT8BBBBB01320.46 BB01
082ozs_T_DT8_DG9BBBBB00640.23 BB00
092ozs_T_DG9_DA10BBBBB00600.39 BB00
102ozs_T_DA10_DC11BBwBB0290.27 BB02
112ozs_T_DC11_DA12BBBBB00690.34 BB00
122ozs_T_DA12_DG13BBBBB00480.20 BB00
132ozs_T_DG13_DC14NANNANT00.33 BB10
142ozs_T_DC14_DC15miBBB15370.30 BB15
152ozs_T_DC15_DG16B12BB04860.22 BB04
162ozs_T_DG16_DC17BBBBB00530.30 BB00
172ozs_T_DC17_DG18NANNANT01.01 OP17
182ozs_P_DG101_DC102NANNANT00.49 BB13
192ozs_P_DC102_DG103NANNANT00.65 BB17
202ozs_P_DG103_DG104BBwBB17470.33 BB17
212ozs_P_DG104_DC105BBBBB01570.15 BB01
222ozs_P_DC105_DT106BBBBB00770.24 BB00
232ozs_P_DT106_DG107BBBBB01550.29 BB01
242ozs_P_DG107_DT108BBBBB00680.27 BB00
252ozs_P_DT108_DC109BBBBB01660.17 BB01
262ozs_P_DC109_DA110BBBBB01700.20 BB01
272ozs_P_DA110_DT111BBBBB01740.22 BB01
282ozs_P_DT111_DA112B-ABA10550.49 BA10
292ozs_P_DA112_DA113A-BAB04650.24 AB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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