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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal Structure of UNG2/DNA(TM)

Results of the assignment of 13 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012oyt_B_DT2_DG3NANNANT00.69 AB02
022oyt_B_DG3_DT4A-BAB01350.21 AB01
032oyt_B_DA6_DT7BBBBB01740.30 BB01
042oyt_B_DT7_DC8BBBBB00230.29 BB00
052oyt_B_DC8_DT9BBBBB01820.18 BB01
062oyt_B_DT9_DT10BBBBB00390.21 BB00
072oyt_C_DA21_DA22SYNBBS1970.10 BBS1
082oyt_C_DA22_DA23B12BB04680.22 BB04
092oyt_C_DA23_DG24B12BB04600.24 BB04
102oyt_C_DG24_DA25BBBBB00920.12 BB00
112oyt_C_DA25_DT26B-ABA05910.11 BA05
122oyt_C_DA28_DC29B-ABA05830.19 BA05
132oyt_C_DC29_DA30NANNANT00.44 BA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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