Conformers:
ABBIImiBZICOPNSYNN
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Crystal structure of a UNG2/modified DNA complex that represent a stabilized short-lived extrahelical state in ezymatic DNA base flipping
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 15 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2oxm_B_DT2_DG3 | NAN | NANT | 0 | 0.73 |
| 02 | 2oxm_B_DG3_DT4 | B12 | BB05 | 26 | 0.35 |
| 03 | 2oxm_B_DT4_DT5 | NAN | NANT | 0 | 1.69 |
| 04 | 2oxm_B_DT5_DA6 | NAN | NANT | 0 | 1.62 |
| 05 | 2oxm_B_DA6_DT7 | NAN | NANT | 0 | 0.44 |
| 06 | 2oxm_B_DT7_DC8 | A-B | AB02 | 28 | 0.26 |
| 07 | 2oxm_B_DC8_DT9 | NAN | NANT | 0 | 0.53 |
| 08 | 2oxm_B_DT9_DT10 | NAN | NANT | 0 | 0.48 |
| 09 | 2oxm_C_DA21_DA22 | SYN | BBS1 | 20 | 0.23 |
| 10 | 2oxm_C_DA22_DA23 | BBw | BB17 | 49 | 0.45 |
| 11 | 2oxm_C_DA23_DG24 | NAN | NANT | 0 | 0.46 |
| 12 | 2oxm_C_DG24_DA25 | BBB | BB00 | 76 | 0.28 |
| 13 | 2oxm_C_DA25_DT26 | NAN | NANT | 0 | 0.48 |
| 14 | 2oxm_C_DA28_DC29 | B-A | BA13 | 31 | 0.38 |
| 15 | 2oxm_C_DC29_DA30 | NAN | NANT | 0 | 0.56 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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