Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
RECOGNITION OF A DNA OPERATOR BY THE REPRESSOR OF PHAGE 434. A VIEW AT HIGH RESOLUTION
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2or1_A_DA1_DA2 | NAN | NANT | 0 | 0.36 |
| 02 | 2or1_A_DA2_DG3 | miB | BB15 | 45 | 0.30 |
| 03 | 2or1_A_DG3_DT4 | B-A | BA08 | 70 | 0.45 |
| 04 | 2or1_A_DT4_DA5 | NAN | NANT | 0 | 0.36 |
| 05 | 2or1_A_DA5_DC6 | BBB | BB00 | 21 | 0.33 |
| 06 | 2or1_A_DC6_DA7 | NAN | NANT | 0 | 0.27 |
| 07 | 2or1_A_DA7_DA8 | B12 | BB04 | 55 | 0.23 |
| 08 | 2or1_A_DA8_DA9 | B12 | BB04 | 64 | 0.33 |
| 09 | 2or1_A_DA9_DC10 | B12 | BB04 | 37 | 0.38 |
| 10 | 2or1_A_DC10_DT11 | miB | BB15 | 31 | 0.49 |
| 11 | 2or1_A_DT11_DT12 | NAN | NANT | 0 | 0.33 |
| 12 | 2or1_A_DT12_DT13 | BBB | BB00 | 24 | 0.28 |
| 13 | 2or1_A_DT13_DC14 | NAN | NANT | 0 | 0.45 |
| 14 | 2or1_A_DC14_DT15 | BBB | BB00 | 16 | 0.26 |
| 15 | 2or1_A_DT15_DT16 | B12 | BB04 | 72 | 0.35 |
| 16 | 2or1_A_DT16_DG17 | B12 | BB04 | 13 | 0.29 |
| 17 | 2or1_A_DG17_DT18 | NAN | NANT | 0 | 0.34 |
| 18 | 2or1_A_DT18_DA19 | NAN | NANT | 0 | 0.35 |
| 19 | 2or1_A_DA19_DT20 | BBB | BB00 | 16 | 0.30 |
| 20 | 2or1_B_DT1_DA2 | BBB | BB00 | 26 | 0.33 |
| 21 | 2or1_B_DA2_DT3 | NAN | NANT | 0 | 0.33 |
| 22 | 2or1_B_DT3_DA4 | NAN | NANT | 0 | 0.33 |
| 23 | 2or1_B_DA4_DC5 | BBB | BB00 | 26 | 0.37 |
| 24 | 2or1_B_DC5_DA6 | miB | BB10 | 31 | 0.27 |
| 25 | 2or1_B_DA6_DA7 | B12 | BB04 | 42 | 0.32 |
| 26 | 2or1_B_DA7_DG8 | NAN | NANT | 0 | 0.42 |
| 27 | 2or1_B_DG8_DA9 | BBB | BB00 | 75 | 0.28 |
| 28 | 2or1_B_DA9_DA10 | NAN | NANT | 0 | 0.52 |
| 29 | 2or1_B_DA10_DA11 | BBB | BB00 | 42 | 0.33 |
| 30 | 2or1_B_DA11_DG12 | BBB | BB01 | 32 | 0.24 |
| 31 | 2or1_B_DG12_DT13 | NAN | NANT | 0 | 0.41 |
| 32 | 2or1_B_DT13_DT14 | NAN | NANT | 0 | 0.63 |
| 33 | 2or1_B_DT14_DT15 | NAN | NANT | 0 | 0.39 |
| 34 | 2or1_B_DT15_DG16 | BB2 | BB07 | 11 | 0.38 |
| 35 | 2or1_B_DG16_DT17 | BBB | BB00 | 14 | 0.32 |
| 36 | 2or1_B_DT17_DA18 | NAN | NANT | 0 | 0.38 |
| 37 | 2or1_B_DA18_DC19 | NAN | NANT | 0 | 0.52 |
| 38 | 2or1_B_DC19_DT20 | NAN | NANT | 0 | 0.47 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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