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Conformers: ABBIImiBZICOPNSYNN
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L1 Ribozyme Ligase circular adduct

Results of the assignment of 140 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0012oiu_P_G1_G2AAuAA07590.35 AA07
0022oiu_P_G2_A3AAAAA00780.21 AA00
0032oiu_P_A3_C4AAAAA00830.22 AA00
0042oiu_P_C4_C5AAAAA00880.19 AA00
0052oiu_P_C5_U6AAAAA00620.32 AA00
0062oiu_P_U6_C7AAAAA00380.34 AA00
0072oiu_P_C7_G8AAwAA01380.48 AA01
0082oiu_P_G8_G9AAAAA00390.25 AA00
0092oiu_P_G9_C10AAAAA00550.28 AA00
0102oiu_P_C10_G11NANNANT00.43 AA10
0112oiu_P_G11_A12NANNANT00.22 OP03
0122oiu_P_A12_A13AAwAA11660.36 AA11
0132oiu_P_A13_A14NANNANT00.63 AA10
0142oiu_P_A14_G15NANNANT00.83 AA08
0152oiu_P_G15_C16AAAAA08870.17 AA08
0162oiu_P_C16_C17AAAAA00590.32 AA00
0172oiu_P_C17_G18NANNANT00.62 OP30
0182oiu_P_G18_U19NANNANT02.54 OP1S
0192oiu_P_U19_U20NANNANT00.77 OP06
0202oiu_P_U20_C21AAAAA00580.15 AA00
0212oiu_P_C21_G22AAAAA04730.48 AA04
0222oiu_P_G22_A23AAuAA13810.27 AA13
0232oiu_P_A23_C24AAAAA03430.39 AA03
0242oiu_P_C24_C25AAAAA04720.37 AA04
0252oiu_P_C25_A26AAAAA08700.36 AA08
0262oiu_P_A26_G27AAAAA08510.33 AA08
0272oiu_P_G27_C28AAAAA00770.19 AA00
0282oiu_P_C28_G29AAAAA00710.29 AA00
0292oiu_P_G29_A30OPNOP03860.15 OP03
0302oiu_P_A30_A31AAAAA08540.39 AA08
0312oiu_P_A31_A32AAAAA08770.25 AA08
0322oiu_P_A32_G33NANNANT00.41 AA05
0332oiu_P_G33_C34AAAAA00350.24 AA00
0342oiu_P_C34_U35AAAAA00570.22 AA00
0352oiu_P_U35_C36AAAAA00730.31 AA00
0362oiu_P_C36_U37NANNANT00.58 BB13
0372oiu_P_U37_U38NANNANT01.67 OP18
0382oiu_P_U38_A39NANNANT01.69 BA16
0392oiu_P_A39_G40AAAAA04490.59 AA04
0402oiu_P_G40_A41NANNANT00.47 AA11
0412oiu_P_A41_C42NANNANT00.49 AA04
0422oiu_P_C42_A43AAAAA08860.24 AA08
0432oiu_P_A43_G44A-BAB05550.29 AB05
0442oiu_P_G44_G45NANNANT00.77 OP21
0452oiu_P_G45_A46AAAAA00760.18 AA00
0462oiu_P_A46_G47AAAAA00710.24 AA00
0472oiu_P_G47_G48AAAAA00550.28 AA00
0482oiu_P_G48_U49AAwAA01720.29 AA01
0492oiu_P_U49_U50AAAAA08750.18 AA08
0502oiu_P_U50_A51NANNANT00.83 AA11
0512oiu_P_A51_G52AAAAA08620.45 AA08
0522oiu_P_G52_G53AAAAA08840.17 AA08
0532oiu_P_G53_U54AAAAA08830.16 AA08
0542oiu_P_U54_G55AAAAA00770.10 AA00
0552oiu_P_G55_C56AAAAA04890.27 AA04
0562oiu_P_C56_U57AAAAA00860.21 AA00
0572oiu_P_U57_C58AAAAA00820.13 AA00
0582oiu_P_C58_C59AAAAA00650.24 AA00
0592oiu_P_C59_G60AAAAA03810.23 AA03
0602oiu_P_G60_A61OPNOP04640.21 OP04
0612oiu_P_A61_A62AAAAA00600.26 AA00
0622oiu_P_A62_A63AAAAA00380.25 AA00
0632oiu_P_A63_G64AAwAA05470.38 AA05
0642oiu_P_G64_G65AAAAA00690.23 AA00
0652oiu_P_G65_A66AAAAA00770.18 AA00
0662oiu_P_A66_G67AAAAA00280.30 AA00
0672oiu_P_G67_C68AAAAA00690.20 AA00
0682oiu_P_C68_A69AAAAA00780.14 AA00
0692oiu_P_A69_C70AAAAA04920.16 AA04
0702oiu_P_C70_U71AAAAA04850.22 AA04
0712oiu_Q_G1_G2NANNANT00.69 OP15
0722oiu_Q_G2_A3AAAAA00590.30 AA00
0732oiu_Q_A3_C4AAAAA00750.18 AA00
0742oiu_Q_C4_C5AAAAA00710.28 AA00
0752oiu_Q_C5_U6AAAAA04900.16 AA04
0762oiu_Q_U6_C7AAAAA08500.24 AA08
0772oiu_Q_C7_G8AAAAA08720.30 AA08
0782oiu_Q_G8_G9AAAAA08830.20 AA08
0792oiu_Q_G9_C10AAAAA00800.25 AA00
0802oiu_Q_C10_G11AAAAA00610.30 AA00
0812oiu_Q_G11_A12OPNOP03310.15 OP03
0822oiu_Q_A12_A13AAAAA08720.31 AA08
0832oiu_Q_A13_A14AAAAA04670.23 AA04
0842oiu_Q_A14_G15AAwAA05610.30 AA05
0852oiu_Q_G15_C16AAAAA00590.19 AA00
0862oiu_Q_C16_C17A-BAB05740.20 AB05
0872oiu_Q_C17_G18NANNANT01.40 OP16
0882oiu_Q_G18_U19NANNANT00.33 OP17
0892oiu_Q_U19_U20NANNANT00.94 OP06
0902oiu_Q_U20_C21AAAAA04790.30 AA04
0912oiu_Q_C21_G22AAAAA04400.56 AA04
0922oiu_Q_G22_A23NANNANT00.96 AA11
0932oiu_Q_A23_C24AAAAA00170.56 AA00
0942oiu_Q_C24_C25AAAAA00370.34 AA00
0952oiu_Q_C25_A26AAAAA04470.46 AA04
0962oiu_Q_A26_G27AAwAA01630.39 AA01
0972oiu_Q_G27_C28NANNANT00.43 AA10
0982oiu_Q_C28_G29AAAAA08490.61 AA08
0992oiu_Q_G29_A30NANNANT01.38 OP29
1002oiu_Q_A30_A31NANNANT00.64 AA10
1012oiu_Q_A31_A32NANNANT00.62 AA05
1022oiu_Q_A32_G33NANNANT00.81 AB03
1032oiu_Q_G33_C34B-ABA08450.47 BA08
1042oiu_Q_C34_U35AAAAA08780.30 AA08
1052oiu_Q_U35_C36AAAAA08590.23 AA08
1062oiu_Q_C36_U37A-BAB04550.36 AB04
1072oiu_Q_U37_U38NANNANT00.81 OP14
1082oiu_Q_U38_A39NANNANT00.77 OP11
1092oiu_Q_A39_G40AAAAA00150.48 AA00
1102oiu_Q_G40_A41AAAAA00690.28 AA00
1112oiu_Q_A41_C42AAAAA00760.17 AA00
1122oiu_Q_C42_A43AAAAA00730.29 AA00
1132oiu_Q_A43_G44NANNANT00.90 AA08
1142oiu_Q_G44_G45NANNANT01.84 IC07
1152oiu_Q_G45_A46AAAAA00370.31 AA00
1162oiu_Q_A46_G47AAAAA08560.30 AA08
1172oiu_Q_G47_G48AAwAA01560.43 AA01
1182oiu_Q_G48_U49AAAAA00480.34 AA00
1192oiu_Q_U49_U50AAAAA08810.20 AA08
1202oiu_Q_U50_A51AAwAA01170.59 AA01
1212oiu_Q_A51_G52AAAAA08560.33 AA08
1222oiu_Q_G52_G53AAAAA04750.28 AA04
1232oiu_Q_G53_U54AAAAA08760.24 AA08
1242oiu_Q_U54_G55AAAAA04780.24 AA04
1252oiu_Q_G55_C56NANNANT00.19 AA03
1262oiu_Q_C56_U57AAAAA04890.12 AA04
1272oiu_Q_U57_C58NANNANT00.32 AA04
1282oiu_Q_C58_C59AAAAA08700.20 AA08
1292oiu_Q_C59_G60AAAAA08750.22 AA08
1302oiu_Q_G60_A61OPNOP03510.22 OP03
1312oiu_Q_A61_A62AAAAA00540.34 AA00
1322oiu_Q_A62_A63AAAAA00390.27 AA00
1332oiu_Q_A63_G64AAwAA05690.35 AA05
1342oiu_Q_G64_G65AAAAA08660.16 AA08
1352oiu_Q_G65_A66AAAAA08680.20 AA08
1362oiu_Q_A66_G67AAAAA08860.22 AA08
1372oiu_Q_G67_C68AAAAA08830.17 AA08
1382oiu_Q_C68_A69AAAAA00740.18 AA00
1392oiu_Q_A69_C70AAAAA00650.21 AA00
1402oiu_Q_C70_U71AAAAA00850.20 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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