DNATCO v4.1: results

Full-length hammerhead ribozyme with Mn(II) bound

Results of the assignment of 61 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	2oeu_A_GTP1_G2	AAA	AA00	72	0.20	AA00
02	2oeu_A_G2_A3	AAA	AA00	79	0.17	AA00
03	2oeu_A_A3_U4	AAA	AA00	51	0.36	AA00
04	2oeu_A_U4_G5	AAA	AA00	55	0.38	AA00
05	2oeu_A_G5_U6	AAA	AA00	93	0.15	AA00
06	2oeu_A_U6_A7	AAA	AA00	95	0.12	AA00
07	2oeu_A_A7_C8	NAN	NANT	0	0.97	BB2S
08	2oeu_A_C8_U9	NAN	NANT	0	1.67	OPS1
09	2oeu_A_U9_A10	AAA	AA00	85	0.18	AA00
10	2oeu_A_A10_C11	AAA	AA08	88	0.19	AA08
11	2oeu_A_C11_C12	AAA	AA00	69	0.23	AA00
12	2oeu_A_C12_A13	AAA	AA00	89	0.15	AA00
13	2oeu_A_A13_G14	AAw	AA10	49	0.24	AA10
14	2oeu_A_G14_C15	A-B	AB05	73	0.28	AB05
15	2oeu_A_C15_U16	NAN	NANT	0	0.50	BA17
16	2oeu_A_U16_G17	OPN	OP04	77	0.17	OP04
17	2oeu_A_G17_A18	AAA	AA00	50	0.33	AA00
18	2oeu_A_A18_U19	NAN	NANT	0	0.89	IC02
19	2oeu_A_U19_G20	ZZZ	ZZ02	9	0.54	ZZ02
20	2oeu_A_G20_A21	NAN	NANT	0	0.76	OP01
21	2oeu_A_A21_G22	AAA	AA08	38	0.66	AA08
22	2oeu_A_G22_U23	AAA	AA04	85	0.27	AA04
23	2oeu_A_U23_C24	AAA	AA08	71	0.25	AA08
24	2oeu_A_C24_C25	AAA	AA03	83	0.22	AA03
25	2oeu_A_C25_C26	AAA	AA00	93	0.16	AA00
26	2oeu_A_C26_A27	AAA	AA00	62	0.37	AA00
27	2oeu_A_A27_A28	NAN	NANT	0	0.52	IC02
28	2oeu_A_A28_A29	NAN	NANT	0	1.87	OP14
29	2oeu_A_A29_U30	OPN	OP11	52	0.45	OP11
30	2oeu_A_U30_A31	NAN	NANT	0	0.46	AB01
31	2oeu_A_A31_G32	NAN	NANT	0	1.14	OP10
32	2oeu_A_G32_G33	AAA	AA00	55	0.22	AA00
33	2oeu_A_G33_A34	AAA	AA00	89	0.17	AA00
34	2oeu_A_A34_C35	AAA	AA00	72	0.19	AA00
35	2oeu_A_C35_G36	AAA	AA00	36	0.44	AA00
36	2oeu_A_G36_A37	AAu	AA12	74	0.33	AA12
37	2oeu_A_A37_A38	AAA	AA00	65	0.34	AA00
38	2oeu_A_A38_A39	AAA	AA00	73	0.28	AA00
39	2oeu_A_A39_C40	AAA	AA00	81	0.20	AA00
40	2oeu_A_C40_G41	AAA	AA00	87	0.14	AA00
41	2oeu_A_G41_C42	AAA	AA00	93	0.14	AA00
42	2oeu_A_C42_C43	AAw	AA01	70	0.26	AA01
43	2oeu_B_G1_G2	AAA	AA00	82	0.17	AA00
44	2oeu_B_G2_C3	AAA	AA00	88	0.15	AA00
45	2oeu_B_C3_G4	AAA	AA00	79	0.14	AA00
46	2oeu_B_G4_U5	AAA	AA00	89	0.16	AA00
47	2oeu_B_U5_OMC6	A-B	AB05	76	0.29	AB05
48	2oeu_B_OMC6_C7	NAN	NANT	0	1.47	OP16
49	2oeu_B_C7_U8	AAA	AA00	85	0.16	AA00
50	2oeu_B_U8_G9	AAA	AA00	79	0.20	AA00
51	2oeu_B_G9_G10	AAw	AA01	42	0.21	AA01
52	2oeu_B_G10_5BU11	AAA	AA00	44	0.33	AA00
53	2oeu_B_5BU11_A12	AAA	AA00	85	0.20	AA00
54	2oeu_B_A12_U13	A-B	AB05	79	0.13	AB05
55	2oeu_B_U13_C14	OPN	OP16	79	0.20	OP16
56	2oeu_B_C14_C15	A-B	AB05	78	0.24	AB05
57	2oeu_B_C15_A16	NAN	NANT	0	0.97	OP15
58	2oeu_B_A16_A17	AAA	AA00	45	0.36	AA00
59	2oeu_B_A17_U18	AAA	AA00	81	0.28	AA00
60	2oeu_B_U18_C19	AAA	AA00	79	0.14	AA00
61	2oeu_B_C19_DC20	AAA	AA00	94	0.17	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 61 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Definitions

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