Conformers:
ABBIImiBZICOPNSYNN
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1.8 A X-ray crystal structure of Apramycin complex with RNA fragment GGGCGUCGCUAGUACC/CGGUACUAAAAGUCGCC containing the human ribosomal decoding A site: RNA construct with 5'-overhang
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 31 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2oe8_A_G1_G2 | AAA | AA00 | 57 | 0.26 |
| 02 | 2oe8_A_G2_G3 | AAA | AA00 | 85 | 0.13 |
| 03 | 2oe8_A_G3_C1404 | AAA | AA00 | 89 | 0.15 |
| 04 | 2oe8_A_A14_C15 | AAA | AA08 | 82 | 0.21 |
| 05 | 2oe8_A_C15_C16 | AAA | AA00 | 94 | 0.12 |
| 06 | 2oe8_A_C1404_G1405 | AAA | AA00 | 90 | 0.12 |
| 07 | 2oe8_A_G1405_U1406 | AAA | AA00 | 68 | 0.31 |
| 08 | 2oe8_A_U1406_C1407 | AAA | AA00 | 72 | 0.23 |
| 09 | 2oe8_A_C1407_G1408 | AAA | AA00 | 93 | 0.22 |
| 10 | 2oe8_A_G1408_C1409 | AAA | AA00 | 92 | 0.14 |
| 11 | 2oe8_A_C1409_U1410 | AAA | AA00 | 79 | 0.26 |
| 12 | 2oe8_A_U1410_A1411 | AAA | AA00 | 84 | 0.17 |
| 13 | 2oe8_A_A1411_G1412 | AAA | AA00 | 94 | 0.11 |
| 14 | 2oe8_A_G1412_U1413 | AAA | AA00 | 81 | 0.19 |
| 15 | 2oe8_A_U1413_A14 | AAA | AA00 | 97 | 0.12 |
| 16 | 2oe8_B_C83_G84 | AAA | AA00 | 33 | 0.30 |
| 17 | 2oe8_B_G84_G85 | AAA | AA00 | 91 | 0.11 |
| 18 | 2oe8_B_G85_U86 | AAA | AA00 | 87 | 0.18 |
| 19 | 2oe8_B_U86_A1487 | AAA | AA00 | 80 | 0.17 |
| 20 | 2oe8_B_C98_C99 | AAA | AA00 | 86 | 0.14 |
| 21 | 2oe8_B_A1487_C1488 | AAA | AA00 | 84 | 0.13 |
| 22 | 2oe8_B_C1488_U1489 | AAA | AA00 | 90 | 0.14 |
| 23 | 2oe8_B_U1489_A1490 | AAA | AA00 | 89 | 0.12 |
| 24 | 2oe8_B_A1490_A1491 | NAN | NANT | 0 | 0.65 |
| 25 | 2oe8_B_A1491_A1492 | NAN | NANT | 0 | 0.42 |
| 26 | 2oe8_B_A1492_A1493 | NAN | NANT | 0 | 0.43 |
| 27 | 2oe8_B_A1493_G1494 | NAN | NANT | 0 | 1.02 |
| 28 | 2oe8_B_G1494_U1495 | AAA | AA00 | 80 | 0.26 |
| 29 | 2oe8_B_U1495_C1496 | AAA | AA08 | 87 | 0.27 |
| 30 | 2oe8_B_C1496_G1497 | AAA | AA00 | 81 | 0.09 |
| 31 | 2oe8_B_G1497_C98 | AAA | AA00 | 83 | 0.16 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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