Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of NFAT bound to the HIV-1 LTR tandem kappaB enhancer element
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 48 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2o93_A_DA1_DG2 | BBB | BB00 | 50 | 0.43 |
| 02 | 2o93_A_DG2_DG3 | BBw | BB02 | 70 | 0.20 |
| 03 | 2o93_A_DG3_DG4 | B12 | BB05 | 23 | 0.48 |
| 04 | 2o93_A_DG4_DA5 | BBw | BB16 | 62 | 0.45 |
| 05 | 2o93_A_DA5_DC6 | BBB | BB00 | 60 | 0.28 |
| 06 | 2o93_A_DC6_DT7 | BBB | BB00 | 59 | 0.31 |
| 07 | 2o93_A_DT7_DT8 | BBw | BB02 | 79 | 0.19 |
| 08 | 2o93_A_DT8_DT9 | BBB | BB00 | 52 | 0.29 |
| 09 | 2o93_A_DT9_DC10 | BBB | BB00 | 65 | 0.17 |
| 10 | 2o93_A_DC10_DC11 | miB | BB15 | 31 | 0.32 |
| 11 | 2o93_A_DC11_DG12 | BBw | BB02 | 77 | 0.21 |
| 12 | 2o93_A_DG12_DC13 | BBB | BB00 | 65 | 0.22 |
| 13 | 2o93_A_DC13_DT14 | BBB | BB00 | 55 | 0.23 |
| 14 | 2o93_A_DT14_DG15 | B12 | BB04 | 44 | 0.22 |
| 15 | 2o93_A_DG15_DG16 | B12 | BB04 | 39 | 0.33 |
| 16 | 2o93_A_DG16_DG17 | B12 | BB04 | 47 | 0.22 |
| 17 | 2o93_A_DG17_DG18 | BBw | BB02 | 18 | 0.45 |
| 18 | 2o93_A_DG18_DA19 | BBB | BB00 | 47 | 0.36 |
| 19 | 2o93_A_DA19_DC20 | BBw | BB02 | 46 | 0.28 |
| 20 | 2o93_A_DC20_DT21 | BBB | BB00 | 53 | 0.28 |
| 21 | 2o93_A_DT21_DT22 | BBB | BB00 | 69 | 0.18 |
| 22 | 2o93_A_DT22_DT23 | BBB | BB00 | 51 | 0.36 |
| 23 | 2o93_A_DT23_DC24 | BBw | BB02 | 90 | 0.15 |
| 24 | 2o93_A_DC24_DC25 | BBw | BB02 | 53 | 0.29 |
| 25 | 2o93_B_DT1_DG2 | BBB | BB00 | 56 | 0.44 |
| 26 | 2o93_B_DG2_DG3 | BBw | BB02 | 70 | 0.20 |
| 27 | 2o93_B_DG3_DA4 | miB | BB13 | 49 | 0.27 |
| 28 | 2o93_B_DA4_DA5 | BBB | BB00 | 30 | 0.43 |
| 29 | 2o93_B_DA5_DA6 | BBB | BB00 | 76 | 0.21 |
| 30 | 2o93_B_DA6_DG7 | BBB | BB00 | 35 | 0.31 |
| 31 | 2o93_B_DG7_DT8 | BBw | BB02 | 10 | 0.32 |
| 32 | 2o93_B_DT8_DC9 | BBB | BB00 | 39 | 0.34 |
| 33 | 2o93_B_DC9_DC10 | B12 | BB04 | 30 | 0.35 |
| 34 | 2o93_B_DC10_DC11 | NAN | NANT | 0 | 0.35 |
| 35 | 2o93_B_DC11_DC12 | BBB | BB00 | 36 | 0.32 |
| 36 | 2o93_B_DC12_DA13 | BB2 | BB07 | 54 | 0.30 |
| 37 | 2o93_B_DA13_DG14 | BBw | BB02 | 54 | 0.31 |
| 38 | 2o93_B_DG14_DC15 | NAN | NANT | 0 | 0.52 |
| 39 | 2o93_B_DC15_DG16 | BBB | BB00 | 58 | 0.33 |
| 40 | 2o93_B_DG16_DG17 | BBw | BB02 | 83 | 0.17 |
| 41 | 2o93_B_DG17_DA18 | BBB | BB00 | 36 | 0.28 |
| 42 | 2o93_B_DA18_DA19 | BB2 | BB07 | 48 | 0.29 |
| 43 | 2o93_B_DA19_DA20 | BBB | BB00 | 76 | 0.22 |
| 44 | 2o93_B_DA20_DG21 | BBB | BB00 | 50 | 0.30 |
| 45 | 2o93_B_DG21_DT22 | BBw | BB02 | 80 | 0.14 |
| 46 | 2o93_B_DT22_DC23 | BBB | BB00 | 21 | 0.25 |
| 47 | 2o93_B_DC23_DC24 | NAN | NANT | 0 | 0.38 |
| 48 | 2o93_B_DC24_DC25 | NAN | NANT | 0 | 0.45 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|