Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
human MutSalpha (MSH2/MSH6) bound to ADP and an O6-methyl-guanine T mispair
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2o8c_E_DG1_DA2 | BBw | BB11 | 56 | 0.44 |
| 02 | 2o8c_E_DA2_DA3 | miB | BB10 | 60 | 0.28 |
| 03 | 2o8c_E_DA3_DC4 | NAN | NANT | 0 | 0.43 |
| 04 | 2o8c_E_DC4_DC5 | NAN | NANT | 0 | 0.53 |
| 05 | 2o8c_E_DC5_DG6 | NAN | NANT | 0 | 0.56 |
| 06 | 2o8c_E_DG6_DC7 | B-A | BA08 | 58 | 0.26 |
| 07 | 2o8c_E_DC7_6OG8 | NAN | NANT | 0 | 0.51 |
| 08 | 2o8c_E_6OG8_DC9 | B-A | BA13 | 79 | 0.30 |
| 09 | 2o8c_E_DC9_DG10 | A-B | AB01 | 48 | 0.23 |
| 10 | 2o8c_E_DG10_DC11 | B-A | BA05 | 65 | 0.19 |
| 11 | 2o8c_E_DC11_DT12 | BBB | BB01 | 18 | 0.36 |
| 12 | 2o8c_E_DT12_DA13 | BBB | BB00 | 55 | 0.30 |
| 13 | 2o8c_E_DA13_DG14 | NAN | NANT | 0 | 0.48 |
| 14 | 2o8c_E_DG14_DG15 | B-A | BA10 | 48 | 0.48 |
| 15 | 2o8c_F_DC16_DC17 | AAA | AA08 | 34 | 0.29 |
| 16 | 2o8c_F_DC17_DT18 | NAN | NANT | 0 | 0.42 |
| 17 | 2o8c_F_DT18_DA19 | B12 | BB04 | 25 | 0.39 |
| 18 | 2o8c_F_DA19_DG20 | BBB | BB00 | 78 | 0.21 |
| 19 | 2o8c_F_DG20_DC21 | B-A | BA13 | 12 | 0.40 |
| 20 | 2o8c_F_DC21_DG22 | A-B | AB02 | 14 | 0.57 |
| 21 | 2o8c_F_DG22_DT23 | NAN | NANT | 0 | 0.74 |
| 22 | 2o8c_F_DT23_DG24 | NAN | NANT | 0 | 0.49 |
| 23 | 2o8c_F_DG24_DC25 | miB | BB10 | 47 | 0.34 |
| 24 | 2o8c_F_DC25_DG26 | B12 | BB04 | 42 | 0.20 |
| 25 | 2o8c_F_DG26_DG27 | B-A | BA01 | 19 | 0.26 |
| 26 | 2o8c_F_DG27_DT28 | A-B | AB01 | 15 | 0.40 |
| 27 | 2o8c_F_DT28_DT29 | B-A | BA13 | 31 | 0.33 |
| 28 | 2o8c_F_DT29_DC30 | NAN | NANT | 0 | 0.63 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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