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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of IRF-3 bound to the interferon-b enhancer

Results of the assignment of 112 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0012o6g_D_DT1_DA2NANNANT00.73 BB02
0022o6g_D_DA2_DA3B12BB04790.32 BB04
0032o6g_D_DA3_DA4BBwBB02830.18 BB02
0042o6g_D_DA4_DT5BBBBB00790.17 BB00
0052o6g_D_DT5_DG6BBwBB02240.40 BB02
0062o6g_D_DG6_DA7NANNANT00.47 BB02
0072o6g_D_DA7_DC8miBBB13570.29 BB13
0082o6g_D_DC8_DA9BBBBB00610.37 BB00
0092o6g_D_DA9_DT10miBBB12580.38 BB12
0102o6g_D_DT10_DA11BBBBB00160.47 BB00
0112o6g_D_DA11_DG12NANNANT00.34 BB13
0122o6g_D_DG12_DG13NANNANT00.65 BB15
0132o6g_D_DG13_DG14B12BB04760.25 BB04
0142o6g_D_DG14_DA15BBwBB02920.25 BB02
0152o6g_D_DA15_DA16BBBBB00770.29 BB00
0162o6g_D_DA16_DA17B12BB04500.28 BB04
0172o6g_D_DA17_DC18BBwBB02540.19 BB02
0182o6g_D_DC18_DT19BBwBB02650.28 BB02
0192o6g_D_DT19_DG20BBBBB00440.52 BB00
0202o6g_D_DG20_DA21BBBBB00870.20 BB00
0212o6g_D_DA21_DA22BBBBB00860.17 BB00
0222o6g_D_DA22_DA23B12BB04900.18 BB04
0232o6g_D_DA23_DG24BBwBB02800.21 BB02
0242o6g_D_DG24_DG25BBwBB02800.30 BB02
0252o6g_D_DG25_DG26BBwBB02500.43 BB02
0262o6g_D_DG26_DA27BBBBB00490.39 BB00
0272o6g_D_DA27_DA28BB2BB07730.14 BB07
0282o6g_D_DA28_DA29BBBBB00760.18 BB00
0292o6g_D_DA29_DG30BBwBB02770.23 BB02
0302o6g_D_DG30_DT31BBwBB02630.33 BB02
0312o6g_D_DT31_DG32BBBBB00510.51 BB00
0322o6g_D_DG32_DA33BBBBB00860.16 BB00
0332o6g_D_DA33_DA34BBBBB00730.23 BB00
0342o6g_D_DA34_DA35B12BB04500.34 BB04
0352o6g_D_DA35_DG36BBBBB00600.30 BB00
0362o6g_D_DG36_DT37BBwBB02640.27 BB02
0372o6g_D_DT37_DG38B12BB04360.29 BB04
0382o6g_D_DG38_DG39miBBB10720.23 BB10
0392o6g_D_DG39_DG40B12BB04310.25 BB04
0402o6g_D_DG40_DA41BBBBB00870.23 BB00
0412o6g_D_DA41_DA42BBBBB00830.22 BB00
0422o6g_D_DA42_DA43BBBBB00700.28 BB00
0432o6g_D_DA43_DT44B12BB04870.20 BB04
0442o6g_D_DT44_DT45BBwBB11910.13 BB11
0452o6g_D_DT45_DC46BBwBB02160.34 BB02
0462o6g_D_DC46_DC47BBwBB02780.21 BB02
0472o6g_D_DC47_DT48miBBB13900.32 BB13
0482o6g_D_DT48_DC49NANNANT00.60 BB02
0492o6g_D_DC49_DT50BBBBB00590.37 BB00
0502o6g_D_DT50_DG51NANNANT00.50 BB02
0512o6g_D_DG51_DA52BB2BB07340.44 BB07
0522o6g_D_DA52_DA53BBBBB00660.30 BB00
0532o6g_D_DA53_DT54BBwBB02330.29 BB02
0542o6g_D_DT54_DA55BBwBB03710.36 BB03
0552o6g_D_DA55_DG56BBwBB03350.31 BB03
0562o6g_D_DG56_DA57BBwBB02380.39 BB02
0572o6g_C_DA1_DT2miBBB12710.48 BB12
0582o6g_C_DT2_DC3NANNANT00.65 BB02
0592o6g_C_DC3_DT4miBBB13600.31 BB13
0602o6g_C_DT4_DA5BBBBB00240.40 BB00
0612o6g_C_DA5_DT6BBwBB02700.32 BB02
0622o6g_C_DT6_DT7BBwBB02580.38 BB02
0632o6g_C_DT7_DC8BB2BB08330.45 BB08
0642o6g_C_DC8_DA9BBwBB11560.34 BB11
0652o6g_C_DA9_DG10BBBBB00220.52 BB00
0662o6g_C_DG10_DA11BBBBB00480.49 BB00
0672o6g_C_DA11_DG12BBBBB00760.40 BB00
0682o6g_C_DG12_DG13miBBB12930.41 BB12
0692o6g_C_DG13_DA14NANNANT00.29 BB03
0702o6g_C_DA14_DA15BBBBB00270.41 BB00
0712o6g_C_DA15_DT16miBBB12810.28 BB12
0722o6g_C_DT16_DT17NANNANT00.45 BB02
0732o6g_C_DT17_DT18BBBBB00750.20 BB00
0742o6g_C_DT18_DC19BBwBB02900.17 BB02
0752o6g_C_DC19_DC20BBwBB02700.31 BB02
0762o6g_C_DC20_DC21BBBBB00660.29 BB00
0772o6g_C_DC21_DA22NANNANT00.72 BB02
0782o6g_C_DA22_DC23miBBB13490.47 BB13
0792o6g_C_DC23_DT24BBwBB02230.44 BB02
0802o6g_C_DT24_DT25BBwBB02560.25 BB02
0812o6g_C_DT25_DT26BBwBB02360.31 BB02
0822o6g_C_DT26_DC27BBBBB00400.33 BB00
0832o6g_C_DC27_DA28BBBBB00690.32 BB00
0842o6g_C_DA28_DC29NANNANT00.87 BB08
0852o6g_C_DC29_DT30NANNANT00.43 BB02
0862o6g_C_DT30_DT31BBwBB02550.22 BB02
0872o6g_C_DT31_DT32BBBBB00790.25 BB00
0882o6g_C_DT32_DC33BBBBB00950.17 BB00
0892o6g_C_DC33_DC34BBwBB02870.21 BB02
0902o6g_C_DC34_DC35miBBB12610.20 BB12
0912o6g_C_DC35_DT36NANNANT00.36 BB03
0922o6g_C_DT36_DT37BBwBB02530.30 BB02
0932o6g_C_DT37_DT38BBwBB02160.39 BB02
0942o6g_C_DT38_DC39BBwBB02640.24 BB02
0952o6g_C_DC39_DA40BBBBB00710.49 BB00
0962o6g_C_DA40_DG41NANNANT00.69 BB02
0972o6g_C_DG41_DT42BBwBB03600.28 BB03
0982o6g_C_DT42_DT43BBwBB02450.33 BB02
0992o6g_C_DT43_DT44miBBB12550.44 BB12
1002o6g_C_DT44_DC45NANNANT00.61 BB02
1012o6g_C_DC45_DC46BBBBB00740.32 BB00
1022o6g_C_DC46_DC47NANNANT00.36 BB02
1032o6g_C_DC47_DT48NANNANT00.26 BB03
1042o6g_C_DT48_DA49BBwBB17380.38 BB17
1052o6g_C_DA49_DT50NANNANT00.70 BB02
1062o6g_C_DT50_DG51BBBBB00510.42 BB00
1072o6g_C_DG51_DT52BBwBB11800.14 BB11
1082o6g_C_DT52_DC53BBwBB03790.24 BB03
1092o6g_C_DC53_DA54BBBBB00670.30 BB00
1102o6g_C_DA54_DT55BBwBB11760.18 BB11
1112o6g_C_DT55_DT56NANNANT00.37 BB02
1122o6g_C_DT56_DT57BBwBB03760.29 BB03

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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