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Conformers: ABBIImiBZICOPNSYNN
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Crystal Structure of NFkB, IRF7, IRF3 bound to the interferon-b enhancer

Results of the assignment of 68 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012o61_E_DT1_DT2NANNANT01.96 OP17
022o61_E_DT2_DG3NANNANT00.66 OP26
032o61_E_DG3_DA4BBBBB00570.31 BB00
042o61_E_DA4_DA5BBwBB02730.30 BB02
052o61_E_DA5_DA6BBBBB00510.27 BB00
062o61_E_DA6_DG7BBwBB02700.20 BB02
072o61_E_DG7_DG8BBwBB02860.23 BB02
082o61_E_DG8_DG9BBBBB00800.23 BB00
092o61_E_DG9_DA10BBwBB02890.26 BB02
102o61_E_DA10_DG11BBBBB00550.39 BB00
112o61_E_DG11_DA12B12BB04580.35 BB04
122o61_E_DA12_DA13BBwBB02810.19 BB02
132o61_E_DA13_DG14BBBBB00490.24 BB00
142o61_E_DG14_DT15BBwBB02660.26 BB02
152o61_E_DT15_DG16BBBBB00670.47 BB00
162o61_E_DG16_DA17BBwBB02660.33 BB02
172o61_E_DA17_DA18BBBBB00500.35 BB00
182o61_E_DA18_DA19BBwBB11820.25 BB11
192o61_E_DA19_DG20BBBBB00420.27 BB00
202o61_E_DG20_DT21BBwBB02860.16 BB02
212o61_E_DT21_DG22BBwBB02670.41 BB02
222o61_E_DG22_DG23BBwBB02270.37 BB02
232o61_E_DG23_DG24BBBBB00830.30 BB00
242o61_E_DG24_DA25BBBBB00870.16 BB00
252o61_E_DA25_DA26B12BB04810.17 BB04
262o61_E_DA26_DA27BBBBB00840.15 BB00
272o61_E_DA27_DT28BBwBB02860.10 BB02
282o61_E_DT28_DT29BBBBB00830.24 BB00
292o61_E_DT29_DC30BBwBB02910.17 BB02
302o61_E_DC30_DC31BBBBB00710.28 BB00
312o61_E_DC31_DT32B12BB04700.23 BB04
322o61_E_DT32_DC33B12BB05330.46 BB05
332o61_E_DC33_DT34BBBBB00670.35 BB00
342o61_E_DT34_DG35NANNANT00.73 BB00
352o61_E_DG35_DT36NANNANT01.17 BB12
362o61_F_DC2_DA3NANNANT00.90 BB11
372o61_F_DA3_DG4NANNANT00.95 BB02
382o61_F_DG4_DA5BB2BB07180.38 BB07
392o61_F_DA5_DG6BBBBB00710.18 BB00
402o61_F_DG6_DG7BB2BB07680.32 BB07
412o61_F_DG7_DA8BBwBB02770.19 BB02
422o61_F_DA8_DA9BBBBB00690.21 BB00
432o61_F_DA9_DT10BBBBB00960.13 BB00
442o61_F_DT10_DT11BBwBB02950.07 BB02
452o61_F_DT11_DT12BBBBB00690.19 BB00
462o61_F_DT12_DC13BBwBB02820.17 BB02
472o61_F_DC13_DC14BBBBB00750.32 BB00
482o61_F_DC14_DC15BB2BB07810.29 BB07
492o61_F_DC15_DA16BBBBB00610.48 BB00
502o61_F_DA16_DC17NANNANT00.43 BB05
512o61_F_DC17_DT18BBwBB02210.48 BB02
522o61_F_DT18_DT19BBwBB02370.25 BB02
532o61_F_DT19_DT20BBBBB00740.24 BB00
542o61_F_DT20_DC21BBBBB00970.15 BB00
552o61_F_DC21_DA22BBBBB00850.30 BB00
562o61_F_DA22_DC23NANNANT00.54 BB02
572o61_F_DC23_DT24BBBBB00680.22 BB00
582o61_F_DT24_DT25BBwBB02660.20 BB02
592o61_F_DT25_DC26BBwBB02520.29 BB02
602o61_F_DC26_DT27BBBBB00730.35 BB00
612o61_F_DT27_DC28BBwBB02460.24 BB02
622o61_F_DC28_DC29BBBBB00700.30 BB00
632o61_F_DC29_DC30miBBB12850.39 BB12
642o61_F_DC30_DT31NANNANT00.48 BB02
652o61_F_DT31_DT32BBwBB02620.26 BB02
662o61_F_DT32_DT33BBBBB00690.24 BB00
672o61_F_DT33_DC34BBwBB02920.15 BB02
682o61_F_DC34_DA35BBwBB02450.44 BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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