Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal Structure of the N-terminal CUT Domain of SATB1 Bound to Matrix Attachment Region DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2o4a_B_DG1_DC2 | BBw | BB02 | 74 | 0.20 |
| 02 | 2o4a_B_DC2_DT3 | BBB | BB00 | 85 | 0.25 |
| 03 | 2o4a_B_DT3_DA4 | BBB | BB00 | 71 | 0.22 |
| 04 | 2o4a_B_DA4_DA5 | BBB | BB00 | 63 | 0.27 |
| 05 | 2o4a_B_DA5_DT6 | BBB | BB00 | 39 | 0.16 |
| 06 | 2o4a_B_DT6_DA7 | BB2 | BB07 | 69 | 0.21 |
| 07 | 2o4a_B_DA7_DT8 | BBw | BB02 | 92 | 0.12 |
| 08 | 2o4a_B_DT8_DA9 | BBB | BB00 | 64 | 0.22 |
| 09 | 2o4a_B_DA9_DT10 | BBB | BB00 | 74 | 0.21 |
| 10 | 2o4a_B_DT10_DG11 | BBB | BB00 | 72 | 0.24 |
| 11 | 2o4a_B_DG11_DC12 | BBw | BB02 | 64 | 0.27 |
| 12 | 2o4a_C_DG1_DC2 | BBB | BB00 | 76 | 0.30 |
| 13 | 2o4a_C_DC2_DA3 | BBB | BB00 | 93 | 0.14 |
| 14 | 2o4a_C_DA3_DT4 | BBw | BB02 | 85 | 0.19 |
| 15 | 2o4a_C_DT4_DA5 | BBB | BB00 | 75 | 0.17 |
| 16 | 2o4a_C_DA5_DT6 | BBB | BB00 | 94 | 0.15 |
| 17 | 2o4a_C_DT6_DA7 | BBB | BB00 | 85 | 0.24 |
| 18 | 2o4a_C_DA7_DT8 | BBw | BB02 | 97 | 0.11 |
| 19 | 2o4a_C_DT8_DT9 | BBB | BB00 | 82 | 0.21 |
| 20 | 2o4a_C_DT9_DA10 | BB2 | BB07 | 95 | 0.23 |
| 21 | 2o4a_C_DA10_DG11 | BBB | BB00 | 90 | 0.12 |
| 22 | 2o4a_C_DG11_DC12 | BBw | BB02 | 76 | 0.27 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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