Conformers:
ABBIImiBZICOPNSYNN
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Crystal Structure of the Prokaryotic Ribosomal Decoding Site Complexed with Paromamine Derivative NB30
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2o3x_A_G3_C4 | AAA | AA00 | 93 | 0.18 |
| 02 | 2o3x_A_C4_G5 | AAA | AA00 | 86 | 0.19 |
| 03 | 2o3x_A_G5_U6 | NAN | NANT | 0 | 1.46 |
| 04 | 2o3x_A_U6_C7 | NAN | NANT | 0 | 1.63 |
| 05 | 2o3x_A_C7_A8 | AAA | AA00 | 82 | 0.28 |
| 06 | 2o3x_A_A8_C9 | AAA | AA00 | 80 | 0.20 |
| 07 | 2o3x_A_C9_A10 | AAA | AA00 | 85 | 0.14 |
| 08 | 2o3x_A_A10_C11 | AAA | AA00 | 62 | 0.28 |
| 09 | 2o3x_A_C11_C12 | AAA | AA00 | 75 | 0.24 |
| 10 | 2o3x_A_C12_G13 | AAA | AA00 | 87 | 0.21 |
| 11 | 2o3x_A_G13_G14 | AAA | AA00 | 65 | 0.19 |
| 12 | 2o3x_A_G14_U15 | AAA | AA00 | 51 | 0.23 |
| 13 | 2o3x_A_U15_G16 | AAA | AA00 | 49 | 0.31 |
| 14 | 2o3x_A_G16_A17 | NAN | NANT | 0 | 1.22 |
| 15 | 2o3x_A_A17_A18 | NAN | NANT | 0 | 1.49 |
| 16 | 2o3x_A_A18_G19 | NAN | NANT | 0 | 0.87 |
| 17 | 2o3x_A_G19_U20 | AAA | AA00 | 6 | 0.54 |
| 18 | 2o3x_A_U20_C21 | AAA | AA08 | 71 | 0.22 |
| 19 | 2o3x_A_C21_G22 | AAA | AA00 | 26 | 0.35 |
| 20 | 2o3x_A_G22_C23 | AAA | AA00 | 74 | 0.19 |
| 21 | 2o3x_B_G26_C27 | AAA | AA00 | 84 | 0.21 |
| 22 | 2o3x_B_C27_G28 | AAA | AA00 | 88 | 0.14 |
| 23 | 2o3x_B_G28_U29 | AAA | AA00 | 12 | 0.40 |
| 24 | 2o3x_B_U29_C30 | AAw | AA06 | 79 | 0.23 |
| 25 | 2o3x_B_C30_A31 | AAA | AA08 | 90 | 0.19 |
| 26 | 2o3x_B_A31_C32 | AAA | AA00 | 89 | 0.17 |
| 27 | 2o3x_B_C32_A33 | AAA | AA04 | 27 | 0.40 |
| 28 | 2o3x_B_A33_C34 | AAA | AA00 | 58 | 0.25 |
| 29 | 2o3x_B_C34_C35 | AAA | AA00 | 87 | 0.19 |
| 30 | 2o3x_B_C35_G36 | AAA | AA08 | 79 | 0.16 |
| 31 | 2o3x_B_G36_G37 | AAA | AA00 | 90 | 0.23 |
| 32 | 2o3x_B_G37_U38 | AAA | AA00 | 86 | 0.19 |
| 33 | 2o3x_B_U38_G39 | AAA | AA00 | 47 | 0.25 |
| 34 | 2o3x_B_G39_A40 | NAN | NANT | 0 | 1.94 |
| 35 | 2o3x_B_A40_A41 | AAA | AA09 | 60 | 0.26 |
| 36 | 2o3x_B_A41_G42 | NAN | NANT | 0 | 0.74 |
| 37 | 2o3x_B_G42_U43 | AAA | AA00 | 39 | 0.32 |
| 38 | 2o3x_B_U43_C44 | AAA | AA00 | 84 | 0.16 |
| 39 | 2o3x_B_C44_G45 | AAA | AA00 | 85 | 0.19 |
| 40 | 2o3x_B_G45_C46 | AAA | AA00 | 18 | 0.41 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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