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Conformers: ABBIImiBZICOPNSYNN
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Crystal Structure of the Homo sapiens Cytoplasmic Ribosomal Decoding Site complexed with paromamine derivative NB33

Results of the assignment of 41 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012o3v_A_U2_G3AAAAA00450.30 AA00
022o3v_A_G3_C4AAAAA08320.40 AA08
032o3v_A_C4_G5AAAAA00700.24 AA00
042o3v_A_G5_U6AAAAA00740.22 AA00
052o3v_A_U6_C7AAAAA00800.18 AA00
062o3v_A_C7_G8AAAAA00660.22 AA00
072o3v_A_G8_C9AAAAA00500.29 AA00
082o3v_A_C9_U10AAAAA00780.15 AA00
092o3v_A_U10_C11AAAAA00940.08 AA00
102o3v_A_C11_C12AAAAA00870.17 AA00
112o3v_A_C12_G13AAAAA00900.14 AA00
122o3v_A_G13_G14AAAAA00850.14 AA00
132o3v_A_G14_A15AAAAA00920.12 AA00
142o3v_A_A15_A16NANNANT00.52 OP04
152o3v_A_A16_A17NANNANT01.61 OP16
162o3v_A_A17_A18NANNANT00.63 OP01
172o3v_A_A18_G19NANNANT01.85 OP16
182o3v_A_G19_U20NANNANT00.53 AA12
192o3v_A_U20_C21AAAAA00660.26 AA00
202o3v_A_C21_G22AAAAA00700.18 AA00
212o3v_A_G22_C23AAAAA00870.16 AA00
222o3v_B_G26_C27AAAAA00890.17 AA00
232o3v_B_C27_G28NANNANT00.37 AA10
242o3v_B_G28_U29AAAAA00200.40 AA00
252o3v_B_U29_C30AAAAA00930.13 AA00
262o3v_B_C30_G31AAAAA00840.24 AA00
272o3v_B_G31_C32AAAAA00960.07 AA00
282o3v_B_C32_U33AAAAA00860.22 AA00
292o3v_B_U33_C34AAAAA00890.13 AA00
302o3v_B_C34_C35AAAAA00820.20 AA00
312o3v_B_C35_G36AAAAA08840.14 AA08
322o3v_B_G36_G37AAAAA08720.29 AA08
332o3v_B_G37_A38AAAAA08800.20 AA08
342o3v_B_A38_A39AAAAA00620.27 AA00
352o3v_B_A39_A40NANNANT01.23 OP14
362o3v_B_A40_A41AAAAA08640.23 AA08
372o3v_B_A41_G42NANNANT00.94 AA12
382o3v_B_G42_U43NANNANT00.59 AA12
392o3v_B_U43_C44AAAAA08870.21 AA08
402o3v_B_C44_G45AAAAA00340.33 AA00
412o3v_B_G45_C46AAAAA08480.39 AA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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