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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of RNase III from Aquifex aeolicus complexed with ds-RNA at 2.9-Angstrom Resolution

Results of the assignment of 45 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012nue_C_G1_G2AAAAA00800.20 AA00
022nue_C_G2_G3AAwAA01840.14 AA01
032nue_C_G3_A4AAAAA00290.34 AA00
042nue_C_A4_C5AAAAA00810.15 AA00
052nue_C_C5_A6AAAAA00910.23 AA00
062nue_C_A6_A7AAAAA00930.17 AA00
072nue_C_A7_G8AAAAA00970.08 AA00
082nue_C_G8_C9AAAAA00740.18 AA00
092nue_C_C9_G10AAAAA00880.15 AA00
102nue_C_G10_C11AAAAA00900.17 AA00
112nue_C_C11_A12AAAAA00850.23 AA00
122nue_C_A12_A13AAAAA00930.13 AA00
132nue_C_A13_G14AAAAA00870.07 AA00
142nue_C_G14_G15AAAAA00800.15 AA00
152nue_C_G15_U16AAAAA00860.17 AA00
162nue_C_U16_C17AAAAA00940.14 AA00
172nue_C_C17_A18AAAAA00930.18 AA00
182nue_C_A18_U19AAAAA00640.25 AA00
192nue_C_U19_U20AAAAA00710.18 AA00
202nue_C_U20_C21AAAAA00800.24 AA00
212nue_C_C21_G22AAAAA08620.38 AA08
222nue_C_G22_C23NANNANT01.23 OP04
232nue_C_C23_A24NANNANT01.26 IC04
242nue_C_A24_A25NANNANT01.59 AA01
252nue_C_A25_G26AAwAA10120.50 AA10
262nue_C_G26_A27AAAAA00740.30 AA00
272nue_C_A27_G28AAwAA01700.30 AA01
282nue_C_G28_U29AAAAA00660.23 AA00
292nue_C_U29_G30AAAAA00880.17 AA00
302nue_C_G30_G31AAAAA00710.22 AA00
312nue_C_G31_C32AAAAA00860.16 AA00
322nue_C_C32_C33AAAAA00890.13 AA00
332nue_C_C33_U34AAAAA00950.11 AA00
342nue_C_U34_U35AAAAA00950.15 AA00
352nue_C_U35_G36AAAAA00940.11 AA00
362nue_C_G36_C37AAAAA00760.15 AA00
372nue_C_C37_G38AAAAA00890.14 AA00
382nue_C_G38_C39AAAAA00970.11 AA00
392nue_C_C39_U40AAAAA00940.12 AA00
402nue_C_U40_U41AAAAA00920.17 AA00
412nue_C_U41_G42AAAAA00920.15 AA00
422nue_C_G42_U43AAAAA00830.22 AA00
432nue_C_U43_C44AAAAA00860.18 AA00
442nue_C_C44_C45AAAAA00790.13 AA00
452nue_C_C45_C46AAAAA00900.20 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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