Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal Structure of sv40 large T antigen origin binding domain with DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2ntc_W_DA1_DC2 | SYN | BBS1 | 34 | 0.41 |
| 02 | 2ntc_W_DC2_DG3 | B12 | BB04 | 78 | 0.21 |
| 03 | 2ntc_W_DG3_DA4 | BBB | BB00 | 81 | 0.17 |
| 04 | 2ntc_W_DA4_DG5 | BBB | BB00 | 77 | 0.33 |
| 05 | 2ntc_W_DG5_DG6 | BB2 | BB07 | 62 | 0.38 |
| 06 | 2ntc_W_DG6_DC7 | BBB | BB01 | 50 | 0.33 |
| 07 | 2ntc_W_DC7_DA8 | BBB | BB00 | 23 | 0.17 |
| 08 | 2ntc_W_DA8_DC9 | NAN | NANT | 0 | 0.47 |
| 09 | 2ntc_W_DC9_DT10 | BBB | BB00 | 25 | 0.55 |
| 10 | 2ntc_W_DT10_DT11 | miB | BB10 | 36 | 0.33 |
| 11 | 2ntc_W_DT11_DC12 | BBB | BB00 | 85 | 0.26 |
| 12 | 2ntc_W_DC12_DT13 | BBB | BB01 | 32 | 0.20 |
| 13 | 2ntc_W_DT13_DG14 | BBB | BB00 | 17 | 0.27 |
| 14 | 2ntc_W_DG14_DG15 | B-A | BA13 | 74 | 0.25 |
| 15 | 2ntc_W_DG15_DC16 | NAN | NANT | 0 | 0.22 |
| 16 | 2ntc_W_DC16_DC17 | AAA | AA08 | 18 | 0.23 |
| 17 | 2ntc_W_DC17_DT18 | A-B | AB01 | 43 | 0.23 |
| 18 | 2ntc_W_DT18_DC19 | BBB | BB00 | 95 | 0.10 |
| 19 | 2ntc_W_DC19_DT20 | miB | BB10 | 43 | 0.27 |
| 20 | 2ntc_W_DT20_DG21 | B12 | BB04 | 71 | 0.27 |
| 21 | 2ntc_C_DT23_DC24 | NAN | NANT | 0 | 0.59 |
| 22 | 2ntc_C_DC24_DA25 | NAN | NANT | 0 | 0.51 |
| 23 | 2ntc_C_DA25_DG26 | B12 | BB04 | 92 | 0.15 |
| 24 | 2ntc_C_DG26_DA27 | BBB | BB00 | 86 | 0.20 |
| 25 | 2ntc_C_DA27_DG28 | BBB | BB01 | 52 | 0.32 |
| 26 | 2ntc_C_DG28_DG29 | B12 | BB04 | 27 | 0.33 |
| 27 | 2ntc_C_DG29_DC30 | BBB | BB00 | 83 | 0.31 |
| 28 | 2ntc_C_DC30_DC31 | B12 | BB04 | 15 | 0.45 |
| 29 | 2ntc_C_DC31_DA32 | B12 | BB04 | 9 | 0.23 |
| 30 | 2ntc_C_DA32_DG33 | NAN | NANT | 0 | 0.33 |
| 31 | 2ntc_C_DG33_DA34 | BBB | BB00 | 32 | 0.29 |
| 32 | 2ntc_C_DA34_DA35 | BBB | BB00 | 86 | 0.16 |
| 33 | 2ntc_C_DA35_DG36 | BBB | BB00 | 52 | 0.22 |
| 34 | 2ntc_C_DG36_DT37 | BBB | BB00 | 44 | 0.24 |
| 35 | 2ntc_C_DT37_DG38 | B-A | BA13 | 71 | 0.21 |
| 36 | 2ntc_C_DG38_DC39 | AAA | AA00 | 78 | 0.16 |
| 37 | 2ntc_C_DC39_DC40 | AAA | AA00 | 70 | 0.25 |
| 38 | 2ntc_C_DC40_DT41 | A-B | AB01 | 68 | 0.23 |
| 39 | 2ntc_C_DT41_DC42 | BBB | BB00 | 75 | 0.17 |
| 40 | 2ntc_C_DC42_DG43 | NAN | NANT | 0 | 0.44 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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